BAC Information

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BAC

Clone NameMSMg01-510N16
Chromosome14 (Build37)
Map Location 48,933,968 - 49,066,132
singlet/doubletdoublet
Overlap geneLOC100041831
Upstream geneC130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367
Downstream gene6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510N16.T7 (MSMg01no510_n16.b1)MSMg01-510N16.TJ (MSMg01no510_n16.g1)
ACCAG584191AG584192
length739749
length of high quality
(start - end)
659 (78 - 736)399 (327 - 725)
definitionCHROMAT_FILE: MSMg01no510_n16.b1 PHD_FILE: MSMg01no510_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:32 2005CHROMAT_FILE: MSMg01no510_n16.g1 PHD_FILE: MSMg01no510_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,933,968 - 48,934,626)(49,065,734 - 49,066,132)
sequence
CACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCGGCG
GAATTCACTATTCTTTCCATTAACACCCTGGGAAGCCACAGTGCACAGAA
CCATCTGTAGGAAGGAAACATGAAATGGTCACATAATTAGAAATCTAAAT
GCCCTGCCTAATGAGAAGCTTTCAATATTACAAATAGTCAAGGAAGCCAA
ACCCAACTGAAAATTTCTGGGGACAAAGTTTTGCCAGCAAGCATGTGTGC
CATACATAGGCAAAGTGGTTTTCTGGAAGATTTATTGACTTTATGGTCAA
ACTATTCAGCTTCCATCAAAGTCTTGTTCCAAGCCATTGTATATCAAGAG
ATCAATAGTTAGTAGCATAGCTAGCCAAGTTTAAAGACAAATAACTCAAA
TCCCAAGACAATTGGATTTTACTCATTTATAATTTGGAGGCCCTTGTGTA
GACAAGTTATGTTGGTTTAGCTAATTTGTATATCTGAGGACTTCAGCTGG
AACCAACCTGCCTTCTTTACGCCGCAGACCCCATCAGCAAAGTGACTCAT
TCATCCCAGGTTGCTTCTCTTTGGCTTATGCTGAGACTTGTGTTGCTCAG
GTCCCCCTCATTAATGGCACATCGACATGGGATTAAATCTTCCCAGGTAG
TGATGCCATTAACATACAAAATAAATAAAACCATGGAGCCTCTAACATAG
CTGGGAACAAGAAAACACTCAAATCCAAGTGACAGGATT
NACGATGCAGTGGGAGGTCTGGNGGNCGCCTGGCTTCANAACCTGGGNGA
ACNATAGAAGGTTCCCAAAAATTCAGAACCGGGCACGGAGCTCCAGCGAG
GGGACGCGGGGCCGGGACACCGAGGCGGCGGCACCCGGAGGCAGGGGGGC
GGGGAGGAGGGCGGCCTGCGAGTACTTTACCCGAGTCTCCCCCAGGCAGC
GAGCGGGGCAGCGTGAGGGTGAACACGGCAGCCACGGAGGCGAACACGGT
CACGCTGCCGCGGAGGGCCCCGGAGCGCCACGGCCCCGCTCCGGCTGCCG
GGCTCCCGCCGTCGCCATGTTTATTCATGGGCCCGGACGCGCGCAGCTCG
CGGACCGTGACCCCTCGCAGCGGTGCGGACCTTCCCTGGCCGAGAGGCGC
GCACAGCCCGCGCCGGCTTCCGGTCTAGCAGGGCCGAGCGCACCATACCT
TCGCCCGCCAGGTCGGGGAGGAGGAGATGGCGGGCGCACTCCGGCACGGC
TTAGGAGTCTTCTGGGGGTCACTGCGCGTGGTACTGTGTCTGCGTCAGTG
TGCTTTGAAGTAACGAATCACAAGGGAGCATAATTCCCAACGACATCAAT
CATGGGCCAGGCCTACTCGCACTATGCAGTCTCTCTCCCCCTTTCCGCAC
TGACTTGGTCCGTTCCAAAAGAGACGGAAGTGGCGTGGATAACGGTGAGC
CAGAAAGCGCTGCTCTGCCCCCTGTGGCGTGGCGTGGAACTGCATATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_n16.b1 MSMg01no510_n16.b1 CHROMAT_FILE:
MSMg01no510_n16.b1 PHD_FILE: MSMg01no510_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:32 2005
         (659 letters)



>mm_chr14_48933768_48934826
          Length = 1059

 Score = 1274 bits (659), Expect = 0.0
 Identities = 659/659 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggaagccacagtgcacagaaccatctgtaggaaggaaacatgaaatggtcacataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggaagccacagtgcacagaaccatctgtaggaaggaaacatgaaatggtcacataat 260

                                                                       
Query: 61  tagaaatctaaatgccctgcctaatgagaagctttcaatattacaaatagtcaaggaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaaatctaaatgccctgcctaatgagaagctttcaatattacaaatagtcaaggaagc 320

                                                                       
Query: 121 caaacccaactgaaaatttctggggacaaagttttgccagcaagcatgtgtgccatacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaacccaactgaaaatttctggggacaaagttttgccagcaagcatgtgtgccatacat 380

                                                                       
Query: 181 aggcaaagtggttttctggaagatttattgactttatggtcaaactattcagcttccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcaaagtggttttctggaagatttattgactttatggtcaaactattcagcttccatc 440

                                                                       
Query: 241 aaagtcttgttccaagccattgtatatcaagagatcaatagttagtagcatagctagcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtcttgttccaagccattgtatatcaagagatcaatagttagtagcatagctagcca 500

                                                                       
Query: 301 agtttaaagacaaataactcaaatcccaagacaattggattttactcatttataatttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtttaaagacaaataactcaaatcccaagacaattggattttactcatttataatttgg 560

                                                                       
Query: 361 aggcccttgtgtagacaagttatgttggtttagctaatttgtatatctgaggacttcagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggcccttgtgtagacaagttatgttggtttagctaatttgtatatctgaggacttcagc 620

                                                                       
Query: 421 tggaaccaacctgccttctttacgccgcagaccccatcagcaaagtgactcattcatccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggaaccaacctgccttctttacgccgcagaccccatcagcaaagtgactcattcatccc 680

                                                                       
Query: 481 aggttgcttctctttggcttatgctgagacttgtgttgctcaggtccccctcattaatgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggttgcttctctttggcttatgctgagacttgtgttgctcaggtccccctcattaatgg 740

                                                                       
Query: 541 cacatcgacatgggattaaatcttcccaggtagtgatgccattaacatacaaaataaata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacatcgacatgggattaaatcttcccaggtagtgatgccattaacatacaaaataaata 800

                                                                      
Query: 601 aaaccatggagcctctaacatagctgggaacaagaaaacactcaaatccaagtgacagg 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaccatggagcctctaacatagctgggaacaagaaaacactcaaatccaagtgacagg 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no510_n16.g1 MSMg01no510_n16.g1 CHROMAT_FILE:
MSMg01no510_n16.g1 PHD_FILE: MSMg01no510_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:32 2005
         (399 letters)



>mm_chr14_49065534_49066332
          Length = 799

 Score =  772 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgggcccggacgcgcgcagctcgcggaccgtgacccctcgcagcggtgcggaccttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 atgggcccggacgcgcgcagctcgcggaccgtgacccctcgcagcggtgcggaccttccc 540

                                                                       
Query: 61  tggccgagaggcgcgcacagcccgcgccggcttccggtctagcagggccgagcgcaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tggccgagaggcgcgcacagcccgcgccggcttccggtctagcagggccgagcgcaccat 480

                                                                       
Query: 121 accttcgcccgccaggtcggggaggaggagatggcgggcgcactccggcacggcttagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 accttcgcccgccaggtcggggaggaggagatggcgggcgcactccggcacggcttagga 420

                                                                       
Query: 181 gtcttctgggggtcactgcgcgtggtactgtgtctgcgtcagtgtgctttgaagtaacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtcttctgggggtcactgcgcgtggtactgtgtctgcgtcagtgtgctttgaagtaacga 360

                                                                       
Query: 241 atcacaagggagcataattcccaacgacatcaatcatgggccaggcctactcgcactatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atcacaagggagcataattcccaacgacatcaatcatgggccaggcctactcgcactatg 300

                                                                       
Query: 301 cagtctctctccccctttccgcactgacttggtccgttccaaaagagacggaagtggcgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cagtctctctccccctttccgcactgacttggtccgttccaaaagagacggaagtggcgt 240

                                                  
Query: 361 ggataacggtgagccagaaagcgctgctctgccccctgt 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ggataacggtgagccagaaagcgctgctctgccccctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)