BAC Information

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BAC

Clone NameMSMg01-511D02
Chromosome14 (Build37)
Map Location 70,982,297 - 70,982,614
singlet/doubletsinglet
Overlap geneNudt18
Upstream geneEntpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr
Downstream geneRai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132, LOC100043136
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511D02.T7 (MSMg01no511_d02.b1)MSMg01-511D02.TJ (MSMg01no511_d02.g1)
ACCAG584447AG584448
length762703
length of high quality
(start - end)
429 (42 - 470)321 (77 - 397)
definitionCHROMAT_FILE: MSMg01no511_d02.b1 PHD_FILE: MSMg01no511_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:59 2005CHROMAT_FILE: MSMg01no511_d02.g1 PHD_FILE: MSMg01no511_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAGGATCCGCGGA
ATTCAGAACAAGTTTCTCCCCCTTTTAAAAAGTACTGAGTTAAGTCAGGC
GTGGTGGTGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGG
ATTACTGAGTTCGAGGCCAGTCTGGTCTACAAAGTGAGTTTAAGGACAGC
CAGAGCTATACAGAGAAACCCTGTCTAAAAAAAAAAAAAGTACTGAGTTA
GCTTGTCGGTGGTGACACATGCCTTTTATCCCAGCCCTCAGGGTGGTAGT
GGTGCACTCCTTTAATGCTACCACTTGGGAGGCAGAGGCAGGTGAATCTC
CCAGCCTTGTCTACAGAGAGAGTTCAGGACAGCCAGGGCTACACAAAGAA
ACCCTGTTTCAGAAAAACAATAAATAAATAAAAAATACTGTGCTAAGATG
TATGACTACTAAAAATGTAAGAATAAAAATATGAGGGGGCTGCCTTAGAT
GGCTTTACATTTTACCATTCCTCCCCGTTCTCCCCCAGTTTTCTGTTTTC
TTTTCTTCCCCCTCTCCCTTTCGTTTCTATCGTCTTTTGTTCTTGGTCTC
TCTTTAGCGCTTTTTTTGTCGTTTCCTGTATTTCCCCTTCCTCCTTTTAT
TTTTTTTTTCTGTTTTTCCCCTATTACTATTCTATACTGCGTTTGCCGCT
TTTTTTTACTTCTCCTCTTTCTTCTGCATTTTTAACTCTCGCCACCATTT
TTCCTTTCCCCC
TTCAATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAATACTCGGGGCTACACAGAG
AAACTCTCAAAAAAAAAAAAAACCCAAAAAAGTACTTACTTATTTGGCAT
GGGTAAAGCTCTGGGTCTCGGTCCTTAACACTCGGTCCTTTTATGTTTGG
TTGGTGGGTTGGACTTTTGAGAGGGTCATGCTCCATACATGTCCAGGATG
GCTTTGAACTGGATAGGGACCCTTTCGTCTCAGCCTCCTGAGTGCTGGAG
TTACAGGTGTGTACTCCGGTGTCCAACTCCCACATCGGCTGTTTTCTAAA
TGGTATGGGAATGAGTATTCTGAATCATAAAGAGTATCCAGGGGGTCTGG
CAATGGAGATTTGAGAAGCAGGTCCTCAGCAGGGTTTCAACAGTGCCTAC
TATAACCACCTGGATAGGCAGCTTAGTGAGTAACACACTTTCTGCATAGG
ACCTTAGTTTGTTTCCCATTTTTATGTAAGGATATCTTCTACTTGCCCAA
GCGCCAGCTCCAGGGGATCTGATGCCTCTGAGGGCCTGCATTTGAGTGTG
CACACACACTCATTTTAACCCAAATCCTTAAAGATCTTTTTAAGAATAAT
CCAGGCTTCTTTCTGAAATACCGGTGCCCAACTTGGGGAGAAGGTTTATG
GGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_d02.g1 MSMg01no511_d02.g1 CHROMAT_FILE:
MSMg01no511_d02.g1 PHD_FILE: MSMg01no511_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:59 2005
         (321 letters)



>mm_chr14_70982280_70982997
          Length = 718

 Score =  580 bits (300), Expect = e-170
 Identities = 315/322 (97%), Gaps = 5/322 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaatactcggggctacacagagaaactctc-aaaaaaaaaaaaaacccaaaaaagtac 59
           |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||   
Sbjct: 335 caaaatactcggggctacacagagaaactctcaaaaaaaaaaaaaaaaccaaaaaag--- 279

                                                                       
Query: 60  ttacttatttggcatgggtaaagctctgggtctcggtccttaacactcggtccttttatg 119
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 -tacttatttggcatgggtaaagctctgggtctcggtccttaacactcggtccttttatg 220

                                                                       
Query: 120 tttggttggtgggttggacttttgagagggtcatgctccatacatgtccaggatggcttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tttggttggtgggttggacttttgagagggtcatgctccatacatgtccaggatggcttt 160

                                                                       
Query: 180 gaactggatagggaccctttcgtctcagcctcctgagtgctggagttacaggtgtgtact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gaactggatagggaccctttcgtctcagcctcctgagtgctggagttacaggtgtgtact 100

                                                                       
Query: 240 ccggtgtccaactcccacatcggctgttttctaaatggtatgggaatgagtattctgaat 299
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  ccggtgcccaactcccacatcggctgttttctaaatggtatgggaatgagtattctgaat 40

                                 
Query: 300 cataaagagtatccagggggtc 321
           ||||||||||||||||||||||
Sbjct: 39  cataaagagtatccagggggtc 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 718
Length adjustment: 9
Effective length of query: 312
Effective length of database: 709
Effective search space:   221208
Effective search space used:   221208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)