BAC Information

Click to search

BAC

Clone NameMSMg01-511L13
Chromosome14 (Build37)
Map Location 77,215,160 - 77,394,542
singlet/doubletdoublet
Overlap geneLOC100043753, LOC100043201
Upstream geneLOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
Downstream gene9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511L13.T7 (MSMg01no511_l13.b1)MSMg01-511L13.TJ (MSMg01no511_l13.g1)
ACCAG584850AG584851
length742706
length of high quality
(start - end)
571 (64 - 634)422 (76 - 497)
definitionCHROMAT_FILE: MSMg01no511_l13.b1 PHD_FILE: MSMg01no511_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:40 2005CHROMAT_FILE: MSMg01no511_l13.g1 PHD_FILE: MSMg01no511_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,215,160 - 77,215,734)(77,394,123 - 77,394,542)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAACTGCTGGCAAGTAGCATAGAGCAGTTGAGCACACTGGCTTAGCA
GGAAGCTGTTAAGGTTAAAGTTAGTTACCCAAATTGAGTCCCAGTTTAGC
TCAGATCTATTAGCTAATTGTTATGAAGCATTTGATACTCTGAACACTTA
AAAACGAGCCACTCTGGTATGTTTAGTTTTTCTCCTGTAATCTGTAAAGT
GGGCACAATAATAATAAGTAGACTTAGGGATATTTGGAAGAGTGCACAAG
AAGCACCTGGAAAACCCTAAAAGCACGGTATTTTCCAAAGGTAGGAAATG
CCTGTCGCGTTTTAAAACTCCACAAAAGAGCACGATCTATTTTTTAGGTC
ATAGCGTTGGGAAAGACTTTATATCGCAATAGATATTGTTGCCGTGTTTA
GAGATAGAATACTTTTATAGCTGTCCCTGGCCAGGAGGCTGGTGTGGAAG
CAGGCAGACGTGGTTGGGCATCCTGGATTCACTTGCCAAGAGAACACGCA
GCTGTGCAATTGGTATCAACCCCAACCATAGAGCTGTTCCGGAACAGGAC
AGTTCTGAGTCAGGGAGAGTGGGAAGCGACAGAGCCACCAGGATCGTTTT
AGGGAAACTGAACACTGCACCGTCTGTAANGAGAGACCTTCGCGTTTGCT
GCCAGCCACAATTAGTTTGTTGCTCATGGCTTAATAATCTCT
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGACCAGGCTAGACTCTGGAC
ATTGCTTCCCTTCCTTAAACCTGAGCATTGGAGCTGGGTTGGACCTGATT
TCCCAGTTGCTTTCACTGTAAAAGCTGTTACAAACATTTCAGTAGATCGC
TGATAGAATAAAACTAGGAAAAAAAATGTGCATGGCTCAAGTTCTGCTTC
CATAATGGCTCAGAGAGTGATTTACATAATCTATAGGAGATGAATATCTT
TGGAGAATGTTGTCTTCTTACTACTTTTAATTTTTATTTTTTTTTTAACT
ATTTACTTATGTATTTTTGAAGCAAGGTCTTGCTTTGTAGCCCTGGCCTA
TCTGGAACTTGATATGTAGCCCAGGTTGGCCTCAAGGAGGAGGTAATCCT
CCTGCCTTTGCCTCTGAAGTGCTGGGATCGCAGGCATGCACCACCAGACC
TGGGTTCTTAATACTGACATATGGTCAAACATATTTATGGATTGCAGTTT
GCTATTGCAGGTATGTGTAGAAAGTATAATGATCCAAATAAAAGGGTGAC
TACTTCTCCCCTTTTATCATTTTCCTGAGGGAATTTGAATTTGGCTTTTT
CTAGGTCCTCCTAGAACATTATTAAAAAATTGGAAGGGATGGCCTAGCCC
TTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_l13.b1 MSMg01no511_l13.b1 CHROMAT_FILE:
MSMg01no511_l13.b1 PHD_FILE: MSMg01no511_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:40 2005
         (571 letters)



>mm_chr14_77214960_77215934
          Length = 975

 Score = 1015 bits (525), Expect = 0.0
 Identities = 561/575 (97%), Gaps = 4/575 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtagcatagagcagttgagcacactggcttagcaggaagctgttaaggttaaagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtagcatagagcagttgagcacactggcttagcaggaagctgttaaggttaaagtta 260

                                                                       
Query: 61  gttacccaaattgagtcccagtttagctcagatctattagctaattgttatgaagcattt 120
           ||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 261 gttacccgaattgagtcccagtttagctcagatctattagctaattgctacgaagcattt 320

                                                                       
Query: 121 gatactctgaacacttaaaaacgagccactctggtatgtttagtttttctcctgtaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatactctgaacacttaaaaacgagccactctggtatgtttagtttttctcctgtaatct 380

                                                                       
Query: 181 gtaaagtgggcacaataataataagtagacttagggatatttggaagagtgcacaagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaagtgggcacaataataataagtagacttagggatatttggaagagtgcacaagaag 440

                                                                       
Query: 241 cacctggaaaaccctaaaagcacggtattttccaaaggtaggaaatgcctgtcgcgtttt 300
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 441 cacctggaaaaccctaaaagcatggtattttccaaaggtaggaaatgcctgttgcgtttt 500

                                                                       
Query: 301 aaaactccacaaaagagcacgatctattttttaggtcatagcgttgggaaagactttata 360
           ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 aaaactccacaaaagagcatgatctatttcttaggtcatagcgttgggaaagactttata 560

                                                                       
Query: 361 tcgcaatagatattgttgccgtgtttagagatagaatacttttatagctgtccctggcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcgcaatagatattgttgccgtgtttagagatagaatacttttatagctgtccctggcca 620

                                                                       
Query: 421 ggaggctggtgtggaagcaggcagacgtggttgggcatcctggattcacttgccaagaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaggctggtgtggaagcaggcagacgtggttgggcatcctggattcacttgccaagaga 680

                                                                       
Query: 481 acacgcagctgtgcaattggtatcaaccccaaccatagagctgttccgga----acagga 536
           ||||||||||||||||||| ||||||||||||||||||||||||||||||    ||||||
Sbjct: 681 acacgcagctgtgcaattgatatcaaccccaaccatagagctgttccggacagaacagga 740

                                              
Query: 537 cagttctgagtcagggagagtgggaagcgacagag 571
           |||||||||||||||||||||||| ||| ||||||
Sbjct: 741 cagttctgagtcagggagagtggggagcaacagag 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 975
Length adjustment: 10
Effective length of query: 561
Effective length of database: 965
Effective search space:   541365
Effective search space used:   541365
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no511_l13.g1 MSMg01no511_l13.g1 CHROMAT_FILE:
MSMg01no511_l13.g1 PHD_FILE: MSMg01no511_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:40 2005
         (422 letters)



>mm_chr14_77394096_77394915
          Length = 820

 Score =  735 bits (380), Expect = 0.0
 Identities = 411/422 (97%), Gaps = 2/422 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaagaccaggctagactctggacattgcttcccttccttaaacctgagcattggagct 60
           |||||||||||||||||||||| |||||| || |||||||| ||||||||||||||||||
Sbjct: 447 cagaagaccaggctagactctgaacattgtttgccttccttgaacctgagcattggagct 388

                                                                       
Query: 61  gggttggacctgatttcccagttgctttcactgtaaaagctgttacaaacatttcagtag 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gggttggaccttatttcccagttgctttcactgtaaaagctgttacaaacatttcagtag 328

                                                                       
Query: 121 atcgctgatagaataaaactaggaaaaaaaatgtgcatggctcaagttctgcttccataa 180
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 327 atcgctgatagaataaaactagg--aaaaaatgtgcatggctcaagttctgcttccataa 270

                                                                       
Query: 181 tggctcagagagtgatttacataatctataggagatgaatatctttggagaatgttgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggctcagagagtgatttacataatctataggagatgaatatctttggagaatgttgtct 210

                                                                       
Query: 241 tcttactacttttaatttttattttttttttaactatttacttatgtatttttgaagcaa 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 209 tcttactacttttaatttttattttgtttttaactatttacttatgtatttttgaagcaa 150

                                                                       
Query: 301 ggtcttgctttgtagccctggcctatctggaacttgatatgtagcccaggttggcctcaa 360
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 149 ggtcttgctttgtagccctggcctatccagaacttgatatgtagcccaggttggcctcaa 90

                                                                       
Query: 361 ggaggaggtaatcctcctgcctttgcctctgaagtgctgggatcgcaggcatgcaccacc 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  ggaggagataatcctcctgcctttgcctctgaagtgctgggatcgcaggcatgcaccacc 30

             
Query: 421 ag 422
           ||
Sbjct: 29  ag 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 820
Length adjustment: 9
Effective length of query: 413
Effective length of database: 811
Effective search space:   334943
Effective search space used:   334943
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)