BAC Information

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BAC

Clone NameMSMg01-511P21
Chromosome14 (Build37)
Map Location 34,661,950 - 34,662,513
singlet/doubletsinglet
Overlap genenone
Upstream geneE130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20
Downstream geneGdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341, Grid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511P21.T7 (MSMg01no511_p21.b1)MSMg01-511P21.TJ (MSMg01no511_p21.g1)
ACCAG585056AG585057
length757758
length of high quality
(start - end)		581 (39 - 619)573 (74 - 646)
definitionCHROMAT_FILE: MSMg01no511_p21.b1 PHD_FILE: MSMg01no511_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:00 2005CHROMAT_FILE: MSMg01no511_p21.g1 PHD_FILE: MSMg01no511_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCATTTTGATCTCTGAAGGGTGACCTCAGATCCCTCCATCCTGTAATG
AATGCAATTGGCTGTGAAGGTAAGCCAGATCTAACTCCCTCACTGGAAGG
TAAAGAAGTTGGAACACACACAAGTGTACATGCACAGGCAAATGGACAGA
TCACGCAAACAGAGATAGAGATAAAGATATAGAGATAGAGATAGATGTTA
GGGTAGACAGACATATGTAGAGAGATGGAGAGACGGAGATATAGAGAGAT
AGATGGTAGATAGATAGTACCACAATGTCCAGGTTTGCCTACAGAAATCC
TAAACCCTGATTCTCTATATTTAGACAGCTAAGACAGAAGACAAAGACTT
GGGATCCTCTACTGGCCTTGAAGGAAACTAAAAAACAAAACAAAACAAGC
AAAATAGTAAGTGGACTTAGTGGTCTTCTCTACAAGTTAGAGGCTCCCAG
TACCATGCATTTCTTTATTTAAAGATCTCTTAGAATATTGCTCAGCACAC
ATCTATATCACACCTCCTCCTTCCAAAGTTCAGGGATCATTGTAGATGAG
GGCTCAAAAACATTGCAGGAGTTATAGGCGGTGGATGACTGCAGGAGACT
GGTTTCTGGTCACAGCAGGGCAGGTACACGTATTTACTCACAGTGGTTGT
GATGATATGCCTAAGAACCTGCCAAGCTCAAGCCAGACAAATTCCCGCAT
GGTGAGN

ATACATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCCATCTCAGGAATGAGTTCCACCTT
GCTGGCAGGGCAGGATCAGAAATTAGTTCATGTTCCCAGGCCCCAGAACT
CAAGTCCTGTCCTGCTTCTTCAGATGTTTCATGCTTGTTGCTTAATCAGT
AAAGGATGTAAAAAGCGAAGATGCTGTTATCCTGTTATCTAAACTCAGGC
ACATGAGTCATAAGTGTGTTGCCTGTCTTGACGTAACTGACGACAGGCTG
CTTGCCCACTCCCTTGTTTCCTTAGCATTCGAAAATTCCGGGCTAGAATC
CAGAAGGGGTCCTGACTGCAAAACCTGACTCAAGGGCCCTGAAACCAGGT
GACCCAGGTAAGGACCAGTCACTCACATTAGCTTCCTTGTTTAACCCTTG
TGTCAAAATATGATTGGTCAATGGAATGCCCACCCTATCCACCTTGTTTT
GTGTTCCCATCCTATAAAAATGTTGTGCAATCTCCCTTTGGGGGATGTGG
TTCAGACCCCAAACTGGCCACTGCCCTGCAAGCACAGAAAATAAAGTTTT
CATTTTTCAGCTTCTGTCTCTGAAGTGAGTTTTCTCGGCTTCCACCCTGT
AGTCCACAACAGCAGGGTCGGCACATTACGGGAAGCACGTAAAAGCATGT
AGGGGAGATGGGGCTTTGCTTAGGCTGTAATCACCTTACTTATCTTCCCG
GAATGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_p21.b1 MSMg01no511_p21.b1 CHROMAT_FILE:
MSMg01no511_p21.b1 PHD_FILE: MSMg01no511_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:00 2005
         (581 letters)



>mm_chr14_34661552_34662532
          Length = 981

 Score = 1048 bits (542), Expect = 0.0
 Identities = 561/572 (98%), Gaps = 8/572 (1%)
 Strand = Plus / Minus

                                                                       
Query: 10  ggaattcattttgatctctgaagggtgacctcagatccctccatcctgtaatgaatgcaa 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 ggaattcattttgatctctgaagggtgacctcagatccctccatcctgtaatgaatgcaa 903

                                                                       
Query: 70  ttggctgtgaaggtaagccagatctaactccctcactggaaggtaaagaagttggaacac 129
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 902 ttggctgtgaaggtaagccagacctaactccctcactggaaggtaaagaagttggaacac 843

                                                                       
Query: 130 acacaagtgtacatgcacaggcaaatggacagatcacgcaaacagagatagagataaaga 189
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 842 acacaagtgtacatgcacaggcaaatggacagatcatgcaaacagagatagagataaaga 783

                                                                       
Query: 190 tatagagatagagatagatgttagggtagacagacatatgtagagagatggagagacgga 249
           |||||||||||||||||||||||||||||||||||||||||||||||||        |||
Sbjct: 782 tatagagatagagatagatgttagggtagacagacatatgtagagagat--------gga 731

                                                                       
Query: 250 gatatagagagatagatggtagatagatagtaccacaatgtccaggtttgcctacagaaa 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gatatagagagatagatggtagatagatagtaccacaatgtccaggtttgcctacagaaa 671

                                                                       
Query: 310 tcctaaaccctgattctctatatttagacagctaagacagaagacaaagacttgggatcc 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tcctaaaccctgattctctatatttagacagctaagacagaagacaaagacttgggatcc 611

                                                                       
Query: 370 tctactggccttgaaggaaactaaaaaacaaaacaaaacaagcaaaatagtaagtggact 429
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 610 tctactggccttgaaggaaactaaaaaacaaaacaaaacaagcaaaatagtacgtggact 551

                                                                       
Query: 430 tagtggtcttctctacaagttagaggctcccagtaccatgcatttctttatttaaagatc 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tagtggtcttctctacaagttagaggctcccagtaccatgcatttctttatttaaagatc 491

                                                                       
Query: 490 tcttagaatattgctcagcacacatctatatcacacctcctccttccaaagttcagggat 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tcttagaatattgctcagcacacatctatatcacacctcctccttccaaagttcagggat 431

                                           
Query: 550 cattgtagatgagggctcaaaaacattgcagg 581
           ||||||||||||||||||||||||||||||||
Sbjct: 430 cattgtagatgagggctcaaaaacattgcagg 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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