BAC Information

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BAC

Clone NameMSMg01-512B24
Chromosome14 (Build37)
Map Location 99,294,738 - 99,467,662
singlet/doubletdoublet
Overlap geneLOC100043787, 2410129H14Rik, 6720463M24Rik
Upstream geneDach1, LOC635593, LOC619716
Downstream geneDis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512B24.T7 (MSMg01no512_b24.b1)MSMg01-512B24.TJ (MSMg01no512_b24.g1)
ACCAG585158AG585159
length774779
length of high quality
(start - end)		574 (38 - 611)536 (66 - 601)
definitionCHROMAT_FILE: MSMg01no512_b24.b1 PHD_FILE: MSMg01no512_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:10 2005CHROMAT_FILE: MSMg01no512_b24.g1 PHD_FILE: MSMg01no512_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,294,738 - 99,295,308)(99,467,127 - 99,467,662)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
TCTTTAATTATCCTTGCTTGCTTTTGACCACATTTTTCCAAGCCGGCAGT
CCTTCCTAGATCCACTCCAGTCTGCCCTAAGAAAGTGAGAGTTCTCTCTG
TCTGTGATAGCTGTAAGTTCAGCCTGTAACGTGGTGTTTTGTTGTCGGTC
TCGATTCTTTGGTGCTTATCAACTTCAGTTCTCTCATAAGTACTATTAAC
GGTAGCAGCCATGGTGAATCTCAACTTCAATCCCGTCATAAATGTTATTA
TCTACAGACCACTGGTGAATTCATACAGCCACATAATAACATCCAGAGAA
GTTATGGTCCCATTGGGCTTCTGAAGGACAGATGCCTTTGGCTATTTTGA
ATGGTGTCTAGAAGATTCCTTGCTGCTATGCAAATACTCTGCTCTCCGTA
TTATAAATATTCCCTCTTCTCACTACAGAAATCCCCATTCTAAAAGCATC
CTTTAAAGACAAGGCTGTTCAGTATAGTAAGTTATTATCTAATTCAGAAA
TGCCCTCTAAATATTAGGAGCATCAGTCAATTGCTCATATTTCTTCAGCT
TTTCTGCTAACATACAGACAAGATCTTTTTACTTGTTTTGGTGGTGGTGG
TTTTTGGTTTTGGGTTTTGGNNNNNNNNNNNNNNNNTNNTNNNNNTNTNN
NNNTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTNNTTTTTNNTTTT
TTTTTTTTTTTTTTTTCTTNTTNT

TTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCATCATCCACTGGCTCTTTTATCCACGTGCTTTC
AGCTACTGTGTCTGTAGGATCGACCATATCCACGGTGTCATTTTCCCTCT
CACTTTCCGCATCGTCCAGCACTGCTCGCTCTTTCTCAGCAATACCAGAG
TGACTCTGTGTAACAGACATGGCAGTGACAACTCGAGGCTCACCACAAGC
ATTTGTGCTGAGTGGAGCCGCGCCTGTGCAGGAAACGTCCGCCTCTTCAT
CTTCACTGTGAGCCTCAAGGGTAAAAGGTATGCGGACCAGGGAGGACAAA
CACTGAGGGCCACCTCTCAGTCTCCGAGGAGACCAGTTTTTGATTGGCGA
GCAGCCATCTATGTACGGACTCCTGATGCTCGGGTTAACGATCCCCGTAG
AAGCTGTTGCACACGAAGCTTCGGGAGAATGAAACGTAAGCTTCCTGGGT
TCTGGAGGGGCAGAGGGAAAATCAGATCACAAAACCACGGAAAACAGAAA
ATGGCAGATAAAAAAGATGGATTCCTGTTACAGTTGTGTTTACTGGAGTG
AAATTTTAGTGTTAATAATAACGGAAAAGGCCAGTGAATACCTCAATAAA
TTCAACCTCAAAAATGGTTTCTATTTCTCTTTGCCAATTTTAACTAAAAT
GGTTTCTTAATTATTATTTCTTCATGATTATACTGCATCATGCCAAAGTT
GGTCACCCCCCGAGAAGATCCTCTACAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_b24.b1 MSMg01no512_b24.b1 CHROMAT_FILE:
MSMg01no512_b24.b1 PHD_FILE: MSMg01no512_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:10 2005
         (574 letters)



>mm_chr14_99294535_99295508
          Length = 974

 Score = 1104 bits (571), Expect = 0.0
 Identities = 571/571 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcctctttaattatccttgcttgcttttgaccacatttttccaagccggcagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcctctttaattatccttgcttgcttttgaccacatttttccaagccggcagt 263

                                                                       
Query: 64  ccttcctagatccactccagtctgccctaagaaagtgagagttctctctgtctgtgatag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccttcctagatccactccagtctgccctaagaaagtgagagttctctctgtctgtgatag 323

                                                                       
Query: 124 ctgtaagttcagcctgtaacgtggtgttttgttgtcggtctcgattctttggtgcttatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgtaagttcagcctgtaacgtggtgttttgttgtcggtctcgattctttggtgcttatc 383

                                                                       
Query: 184 aacttcagttctctcataagtactattaacggtagcagccatggtgaatctcaacttcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacttcagttctctcataagtactattaacggtagcagccatggtgaatctcaacttcaa 443

                                                                       
Query: 244 tcccgtcataaatgttattatctacagaccactggtgaattcatacagccacataataac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcccgtcataaatgttattatctacagaccactggtgaattcatacagccacataataac 503

                                                                       
Query: 304 atccagagaagttatggtcccattgggcttctgaaggacagatgcctttggctattttga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atccagagaagttatggtcccattgggcttctgaaggacagatgcctttggctattttga 563

                                                                       
Query: 364 atggtgtctagaagattccttgctgctatgcaaatactctgctctccgtattataaatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atggtgtctagaagattccttgctgctatgcaaatactctgctctccgtattataaatat 623

                                                                       
Query: 424 tccctcttctcactacagaaatccccattctaaaagcatcctttaaagacaaggctgttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccctcttctcactacagaaatccccattctaaaagcatcctttaaagacaaggctgttc 683

                                                                       
Query: 484 agtatagtaagttattatctaattcagaaatgccctctaaatattaggagcatcagtcaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agtatagtaagttattatctaattcagaaatgccctctaaatattaggagcatcagtcaa 743

                                          
Query: 544 ttgctcatatttcttcagcttttctgctaac 574
           |||||||||||||||||||||||||||||||
Sbjct: 744 ttgctcatatttcttcagcttttctgctaac 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_b24.g1 MSMg01no512_b24.g1 CHROMAT_FILE:
MSMg01no512_b24.g1 PHD_FILE: MSMg01no512_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:10 2005
         (536 letters)



>mm_chr14_99466927_99467862
          Length = 936

 Score = 1029 bits (532), Expect = 0.0
 Identities = 535/536 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatcatccactggctcttttatccacgtgctttcagctactgtgtctgtaggatcgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ccatcatccactggctcttttatccacgtgctttcagctactgtgtctgtaggatcgacc 677

                                                                       
Query: 61  atatccacggtgtcattttccctctcactttccgcatcgtccagcactgctcgctctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atatccacggtgtcattttccctctcactttccgcatcgtccagcactgctcgctctttc 617

                                                                       
Query: 121 tcagcaataccagagtgactctgtgtaacagacatggcagtgacaactcgaggctcacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tcagcaataccagagtgactctgtgtaacagacatggcagtgacaactcgaggctcacca 557

                                                                       
Query: 181 caagcatttgtgctgagtggagccgcgcctgtgcaggaaacgtccgcctcttcatcttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 caagcatttgtgctgagtggagccgcgcctgtgcaggaaacgtccgcctcttcatcttca 497

                                                                       
Query: 241 ctgtgagcctcaagggtaaaaggtatgcggaccagggaggacaaacactgagggccacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctgtgagcctcaagggtaaaaggtatgcggaccagggaggacaaacactgagggccacct 437

                                                                       
Query: 301 ctcagtctccgaggagaccagtttttgattggcgagcagccatctatgtacggactcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctcagtctccgaggagaccagtttttgattggcgagcagccatctatgtacggactcctg 377

                                                                       
Query: 361 atgctcgggttaacgatccccgtagaagctgttgcacacgaagcttcgggagaatgaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atgctcgggttaacgatccccgtagaagctgttgcacacgaagcttcgggagaatgaaac 317

                                                                       
Query: 421 gtaagcttcctgggttctggaggggcagagggaaaatcagatcacaaaaccacggaaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtaagcttcctgggttctggaggggcagagggaaaatcagatcacaaaaccacggaaaac 257

                                                                   
Query: 481 agaaaatggcagataaaaaagatggattcctgttacagttgtgtttactggagtga 536
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agaaaatggcagaaaaaaaagatggattcctgttacagttgtgtttactggagtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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