BAC Information

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BAC

Clone NameMSMg01-512D14
Chromosome14 (Build37)
Map Location 71,731,857 - 71,890,280
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
Downstream geneLOC100043136, LOC668477, LOC668482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512D14.T7 (MSMg01no512_d14.b1)MSMg01-512D14.TJ (MSMg01no512_d14.g1)
ACCAG585234AG585235
length778779
length of high quality
(start - end)		594 (38 - 631)546 (67 - 612)
definitionCHROMAT_FILE: MSMg01no512_d14.b1 PHD_FILE: MSMg01no512_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:18 2005CHROMAT_FILE: MSMg01no512_d14.g1 PHD_FILE: MSMg01no512_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,731,857 - 71,732,447)(71,889,735 - 71,890,280)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTA
GAGTGAAGACTATGCCAGGTGCCCTGGTCAGTGAGCCTTCCCACTCCCTA
GGTCACTCTTACTTCTGGATATTGCTGGCTGGAATCCACACACAAAGGTC
TGTGCTGTGTGGAGAAATGTCCACTTCTGTTGTCACCAATGCAGAGATCA
TATCATGTGATCACAAGATACTAGGCTGAGCAGTTTCCAGACTGCTGCAG
TCTCCAGTGTAGGGGCTACTCTTAGCTCATTTTCATTTGTAAGGAGTAGG
AAGCCCACTACTGAGCGAGTGCTTACAAGTTGTTATACTGAATGCTCTGC
AGAATGTTACACTTAATGCTTGCACTCTTGCCTGTCTTGATTTAGATGGG
ATCACCAGACCCATTTCTCCTGTTTTGAGAGAAATAGCTTGAAAGGGGAG
ATCAGGGTTTCACACTCAGAGAACCTATGTCCAGAGTCACCACATACCAC
TACCCCTTTCCACTTCCTTTCTAAAGAGATTCCTCACTAGCCAGAGGCCC
CCAGACCCAATACCCCATCCAGCAGCCATACTGCCCCGACCTTCAACTTC
ATTCTTCTTGCTAATTTCCCAGTTTAATGATAAGATACTCCATAATTCCA
CCGAGCCCGTCTAAACACTGCACGGAATGGCTCATTAAGCATGAGACTAG
GTGCTTATTTGGTAATGAATTAGAATAGATGTTGCTGGGAATTCTATGTT
AGATATGTAAGTTGATGTGGCCACGGAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCATTTAACATAGATTATCGACTTCTTCCTCTTA
AGTGTCCCACTTACATAATCCTAAGATGCTGATCCACTTTCCATCATAAA
ACTAGAGGAGAGCTATAATGTGCCCAGCACAGCATCTGTCACAAGCGGCT
GCTCAATTTGTGGCAGCTAATTTTTTTGTAGGGTTTTTATTATAAGAATT
AAAAGACTTACTATTCATTTGATTATGGTTTGCGTTTTCTTGAAAGCCTT
TAGCCTGGATTCCAGGGAATGAAAAGGGAAAGAACAAAAAAATAATGCTC
CTTTGAAACAGACAAACCAGAGCAACGACCTCACAAATTTCATCCTAAGT
GTTTGGATTTCACACCAAGAGAGTAATGAGGGTGACACCTGGACCACAGG
GAGAAGCGGGCCTCTTGGGTTAACATCATTCTGCTTCATTCACACCGTTG
TTAGTCTCACTTTTGAAGTATGTAGTGACACTAATTGGCACATAACAAGG
AAGAACTTGGCAAGCAGGTGTGGTAAGATATCCTAAGATGTGGGTGGGAA
CTGTGTCTGAGAACAATAGGCTTATAATAATACTTTAGAAGTGGCTCTGG
GATGTCAAATGGACAAGGACATAGAAACCCCAAAATTCAGCAAGAATAAC
TCAGGATCAAATCCACTGGTAATGCCTCAGTCTTTTTTTCTGTTTCTCAG
NCATTATTTTTCTGTGGCAGAGTGCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_d14.b1 MSMg01no512_d14.b1 CHROMAT_FILE:
MSMg01no512_d14.b1 PHD_FILE: MSMg01no512_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:18 2005
         (594 letters)



>mm_chr14_71731654_71732647
          Length = 994

 Score = 1104 bits (571), Expect = 0.0
 Identities = 586/591 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctagagtgaagactatgccaggtgccctggtcagtgagccttcccactcccta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctagagtgaagactatgccaggtgccctggtcagtgagccttcccactcccta 263

                                                                       
Query: 64  ggtcactcttacttctggatattgctggctggaatccacacacaaaggtctgtgctgtgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtcactcttacttctggatattgctggctggaatccacacacaaaggtctgtgctgtgt 323

                                                                       
Query: 124 ggagaaatgtccacttctgttgtcaccaatgcagagatcatatcatgtgatcacaagata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggagaaatgtccacttctgttgtcaccaatgcagagatcatatcatgtgatcacaagata 383

                                                                       
Query: 184 ctaggctgagcagtttccagactgctgcagtctccagtgtaggggctactcttagctcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctaggctgagcagtttccagactgctgcagtctccagtgtaggggctactcttagctcat 443

                                                                       
Query: 244 tttcatttgtaaggagtaggaagcccactactgagcgagtgcttacaagttgttatactg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttcatttgtaaggagtaggaagcccactactgagcgagtgcttacaagttgttatactg 503

                                                                       
Query: 304 aatgctctgcagaatgttacacttaatgcttgcactcttgcctgtcttgatttagatggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatgctctgcagaatgttacacttaatgcttgcactcttgcctgtcttgatttagatggg 563

                                                                       
Query: 364 atcaccagacccatttctcctgttttgagagaaatagcttgaaaggggagatcagggttt 423
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 564 atcaccagacccatttctcctgttttgagagaaacagcttgaaaggggagattagggttt 623

                                                                       
Query: 424 cacactcagagaacctatgtccagagtcaccacataccactacccctttccacttccttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 624 cacactcagagaacctatgtccagagtcaccacataccactaccccttttcacttccttt 683

                                                                       
Query: 484 ctaaagagattcctcactagccagaggcccccagacccaataccccatccagcagccata 543
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctaaagagatttctcactagccagaggcccccagacccaataccccatccagcagccata 743

                                                              
Query: 544 ctgccccgaccttcaacttcattcttcttgctaatttcccagtttaatgat 594
           |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctgccctgaccttcaacttcattcttcttgctaatttcccagtttaatgat 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_d14.g1 MSMg01no512_d14.g1 CHROMAT_FILE:
MSMg01no512_d14.g1 PHD_FILE: MSMg01no512_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:18 2005
         (546 letters)



>mm_chr14_71889535_71890480
          Length = 946

 Score = 1048 bits (542), Expect = 0.0
 Identities = 545/546 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatttaacatagattatcgacttcttcctcttaagtgtcccacttacataatcctaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tcatttaacatagattatcgacttcttcctcttaagtgtcccacttacataatcctaaga 687

                                                                       
Query: 61  tgctgatccactttccatcataaaactagaggagagctataatgtgcccagcacagcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tgctgatccactttccatcataaaactagaggagagctataatgtgcccagcacagcatc 627

                                                                       
Query: 121 tgtcacaagcggctgctcaatttgtggcagctaatttttttgtagggtttttattataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgtcacaagcggctgctcaatttgtggcagctaatttttttgtagggtttttattataag 567

                                                                       
Query: 181 aattaaaagacttactattcatttgattatggtttgcgttttcttgaaagcctttagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aattaaaagacttactattcatttgattatggtttgcgttttcttgaaagcctttagcct 507

                                                                       
Query: 241 ggattccagggaatgaaaagggaaagaacaaaaaaataatgctcctttgaaacagacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggattccagggaatgaaaagggaaagaacaaaaaaataatgctcctttgaaacagacaaa 447

                                                                       
Query: 301 ccagagcaacgacctcacaaatttcatcctaagtgtttggatttcacaccaagagagtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccagagcaacgacctcacaaatttcatcctaagtgtttggatttcacaccaagagagtaa 387

                                                                       
Query: 361 tgagggtgacacctggaccacagggagaagcgggcctcttgggttaacatcattctgctt 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgagggtgacacctggaccacggggagaagcgggcctcttgggttaacatcattctgctt 327

                                                                       
Query: 421 cattcacaccgttgttagtctcacttttgaagtatgtagtgacactaattggcacataac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cattcacaccgttgttagtctcacttttgaagtatgtagtgacactaattggcacataac 267

                                                                       
Query: 481 aaggaagaacttggcaagcaggtgtggtaagatatcctaagatgtgggtgggaactgtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaggaagaacttggcaagcaggtgtggtaagatatcctaagatgtgggtgggaactgtgt 207

                 
Query: 541 ctgaga 546
           ||||||
Sbjct: 206 ctgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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