BAC Information

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BAC

Clone NameMSMg01-512H04
Chromosome14 (Build37)
Map Location 113,105,962 - 113,106,394
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512H04.T7 (MSMg01no512_h04.b1)MSMg01-512H04.TJ (MSMg01no512_h04.g1)
ACCAG585405AG585406
length740741
length of high quality
(start - end)
580 (41 - 620)434 (72 - 505)
definitionCHROMAT_FILE: MSMg01no512_h04.b1 PHD_FILE: MSMg01no512_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:36 2005CHROMAT_FILE: MSMg01no512_h04.g1 PHD_FILE: MSMg01no512_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATACATGGCTTGGCTGAGCCCACACCATTTCCTTCCCTCTTCTAACTAT
CCCTAGACCTAAAAGGTTCTAGCCTCTGTACAATCTAGTCTTCTATGTTG
ATTGATTCAATCCATCCTCTCTTTGTTTCTACCAGTTTGGTCTTTTACTA
ACTTTGGCAATATTTTCTAATCTTGTGGATCCTCGTCATTCTCTGGCTCC
TTCTGTCTTTACCTTTGTTGTGGGTCTGTGATAGGCAGCCTACTTTGGTT
GAATGGGGCTTGCTCCAGTGACCCAGTAGAGAATTCTACAAGGGATGGAA
AAGTGAGCCACATTCCCAGAGACAGGTGCCTGACGACACAGAGCCCCCCA
ACTCCATAATTCTGTGACTATCAGTCACAAACAATGTCCTAAGCTTCTGG
CATTCTGGCTAGAGTCCACCCCTACAGTTACTTGACTATAGCCAGGAATG
CTCCTTCCCACAGTTACCTGATAGCCCAGCACACTATAAGAGGGAATGCT
TGGCTTCTCCTCGCTCTCTTTAAACTCTCACCTTCGTTACTCTCCTCTCT
AGCCCTCCTTCTCTCTTTCACTCCCCCCTCTCCACATAGTCATGGCCAGG
ATCTCTCTCTTTCTACCTTCTCTTTCTCCCTGTCTTTCTAAAATAAAGCT
CTAAAAACATAGCCTTTCTCTGCTCATCAAGGCCCTCCTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTGGATCCAAATGAATTCAAAATTAT
TTCTCCCTCTCTATAGCATGCACTTGGGCTCACAGGTTATTTATTAGATT
TGTATAATGTTTAGATAACATGGTAGGTATAAGAACACTAATTCTTTTAA
ATTGTATATTTTCTTTTTAATGTAAGTCTTGTTTGATTTCTTTCACCAAT
ATTCTGTAAATTTCACACACACAAGTTTTTTTAACCTTCCAAATTTTTTT
TCTTATTCTGTTTGATCCCGTTATATTTATGTTTACTTCAGACACTGAAA
CAAATAATCTGAGTTGAGTGATGTCAAAATCAATATGTTACTTATATGTG
ATTAATATGGTGCTAAAAACCAACGGTAAGCATTTAAAACATTTCAGAAT
TATTTTTCTGCAATACAGAAATCATCTAATATTACTAATAAAATTACCCT
TAGCATAAATAAATAATATAGATAAAACATGAAAGTATTTTACTGTGAAG
TATAAAATAACATGCATGAAAAGAAGCTAAGGAAATTTGTGAAGTATTGG
TTATGCAAGTAAAAGTGCTTAGTACAAAGTGACCTATAGGCAGTACTTAG
TGTGCTTAATTTCTTATGTGTTTAGCAGGTTACCTGAGAGTCTATTGCTA
TGTGTACCTTAGTAAAACAGAATAGTTTTCACGAACTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_h04.g1 MSMg01no512_h04.g1 CHROMAT_FILE:
MSMg01no512_h04.g1 PHD_FILE: MSMg01no512_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:36 2005
         (434 letters)



>mm_chr14_113105762_113106594
          Length = 833

 Score =  801 bits (414), Expect = 0.0
 Identities = 429/434 (98%), Gaps = 1/434 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtggatccaaatgaattcaaaattatttctccctctctatagcatgcacttgggctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tttgtggatccaaatgaattcaaaattatttctccctctctatagcatgcacttgggctc 574

                                                                       
Query: 61  acaggttatttattagatttgtataatgtttagataacatggtaggtataagaacactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 acaggttatttattagatttgtataatgtttagataacatggtaggtataagaacactaa 514

                                                                       
Query: 121 ttcttttaaattgtatattttctttttaatgtaagtcttgtttgatttctttcaccaata 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttcttttaaattgtatcttttctttttaatgtaagtcttgtttgatttctttcaccaata 454

                                                                       
Query: 181 ttctgtaaatttcacacacacaagtttttttaaccttccaaattttttttcttattctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 453 ttctgtaaatttcacacacacaagtttttttaaccttccaaattttttttcttgttctgt 394

                                                                       
Query: 241 ttgatcccgttatatttatgtttacttcagacactgaaacaaataatctgagttgagtga 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 393 ttgatcccgttatatttatgtttacttcagacattgaaacaaataatctgagttgagtga 334

                                                                       
Query: 301 tgtcaaaatcaatatgttacttatatgtgattaatatggtgctaaaaaccaacggtaagc 360
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 333 tgtcaaaatcaatatgttacttatatgtgattaatatggtgttaaaa-ccaacggtaagc 275

                                                                       
Query: 361 atttaaaacatttcagaattatttttctgcaatacagaaatcatctaatattactaataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atttaaaacatttcagaattatttttctgcaatacagaaatcatctaatattactaataa 215

                         
Query: 421 aattacccttagca 434
           ||||||||||||||
Sbjct: 214 aattacccttagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 833
Length adjustment: 9
Effective length of query: 425
Effective length of database: 824
Effective search space:   350200
Effective search space used:   350200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)