BAC Information

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BAC

Clone NameMSMg01-512M08
Chromosome14 (Build37)
Map Location 94,208,720 - 94,209,329
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512M08.T7 (MSMg01no512_m08.b1)MSMg01-512M08.TJ (MSMg01no512_m08.g1)
ACCAG585653AG585654
length738849
length of high quality
(start - end)
610 (62 - 671)---
definitionCHROMAT_FILE: MSMg01no512_m08.b1 PHD_FILE: MSMg01no512_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:02 2005CHROMAT_FILE: MSMg01no512_m08.g1 PHD_FILE: MSMg01no512_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXAATCAAAAGAGGAGCCGCGGAATTCT
GAATTTCCTCAAGAAGCCTAAGAATCTTAATAAAGAAATGCTTCACTCCC
AAGCATCTCATTCAGAATAAATCATGGATTCTTGATTAATTCTATTTCTC
TGACACTTGATACAAATATTTAGACAGTCATTCAAAGATGGCTTTGTATA
ACACAATACAATAAATGTTAAAATGGGTATTCCAAAACTATCAGCTCTGC
TTTGCATGGTGGTATGCAATAGATTTTCCTTTCTGTTGTTTCCTTGTGTG
TGTTAGAATTAGTTGAGTGCAGGTCCTCTTTCATGCCATGGAAGCCCTGT
ACCAGGGATTTACATCACAAGCCTGTTAGGGAGGAAATGAAGAGCAGGTG
GAATGAACTTTCATTTCTCTTTCAATTATTTATTGTTTTCCAAAATAAAA
GATTGATAGGGAAATTATAAATTCCTGAAGTATTTTTACAAAATTGAATA
ATTAATCTCTTGATCTCTACCTTCTCTCTTGCTCTTGCTCTCTCCTTCCC
CATTCCCTTCCCTTCCCCCTCTCTCCATGTGCTCATGGCCATGGCCGGCC
TCTACTTCTCTGCTCTCTCCCTCTCTCTGTCTTTCTCTGCCTCTACTACC
CTCTTAACTTCCCTCCCCATGCCCTAAATAAACTCTATTCTAGTTTTAAA
AATTTGAGCTAATAATAAAAGGTGGCATATATTTTACT
TGACACTAACTACCTCTCCCCTTCTCCTCACACTACTCACTTCCCTCTCC
CACCCACCACCTCTCCTCATCACACCACATCATGAGAGAAAACACGGCAC
GCTCGCATCAACCTATAAATGATAAGCTCGTCTCCTCTCTATTATCATTC
ATTCTATCTTGTTTTCCATCACGCTACCTCCAAACTACACACCCAACTCT
CCTCCCCTCTATCTCTATATAAACCTACACCTTAATATTCTATCTAACTC
ATCGTCCCACTCAACTATCCATTTTGTCTCTCCCTTTGCCTCCCCTTCTG
CTCTATCTCTCCCTGTTACACTCCTCTCTTTGCGGTGATCCGCGTTTTGC
CGGACTGGTCTCTTATCTCTCTTCATTTCCACAACTTACCACACTACACC
TACACTCATTTTTTTTCTCTGCGTCTCTAAGTACTTTAGCGATAACTACT
CCTCGCTCAACCAATACTGACCCTTCGTATACTCCCGTCGTCTATTCTCA
TCAATCTACCCCCTACCTACGACATCAAAACAAACTCCTCCTTACATGAC
ACATATCCATATACGTTTATTCCCTCAATACTCATTTATTTTATTCCCCT
CATAAATATTTCAGCGCCGCCGCCCCCTCCCATAAAAATAATAAAATAGT
GTTTCTCCCACCCACCCTATAATTAAAAAAAACACCCCGCGCGGGTGTGC
CTTTGCCCGTGCCTTCTTGATTAAAAGACAGGTGGGGGGGTGAGCCACCC
CCCCACCCCTTCTGGTGGTGGGGGGGGGGTATACTTCCACCCGCGCGGGG
GGGGGAGTAGGGGATATCTACCTCGCCCGGCGGGGGGAAGCCCTACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_m08.b1 MSMg01no512_m08.b1 CHROMAT_FILE:
MSMg01no512_m08.b1 PHD_FILE: MSMg01no512_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:02 2005
         (610 letters)



>mm_chr14_94208686_94209695
          Length = 1010

 Score = 1180 bits (610), Expect = 0.0
 Identities = 610/610 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagcctaagaatcttaataaagaaatgcttcactcccaagcatctcattcagaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agaagcctaagaatcttaataaagaaatgcttcactcccaagcatctcattcagaataaa 585

                                                                       
Query: 61  tcatggattcttgattaattctatttctctgacacttgatacaaatatttagacagtcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tcatggattcttgattaattctatttctctgacacttgatacaaatatttagacagtcat 525

                                                                       
Query: 121 tcaaagatggctttgtataacacaatacaataaatgttaaaatgggtattccaaaactat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcaaagatggctttgtataacacaatacaataaatgttaaaatgggtattccaaaactat 465

                                                                       
Query: 181 cagctctgctttgcatggtggtatgcaatagattttcctttctgttgtttccttgtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cagctctgctttgcatggtggtatgcaatagattttcctttctgttgtttccttgtgtgt 405

                                                                       
Query: 241 gttagaattagttgagtgcaggtcctctttcatgccatggaagccctgtaccagggattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gttagaattagttgagtgcaggtcctctttcatgccatggaagccctgtaccagggattt 345

                                                                       
Query: 301 acatcacaagcctgttagggaggaaatgaagagcaggtggaatgaactttcatttctctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 acatcacaagcctgttagggaggaaatgaagagcaggtggaatgaactttcatttctctt 285

                                                                       
Query: 361 tcaattatttattgttttccaaaataaaagattgatagggaaattataaattcctgaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tcaattatttattgttttccaaaataaaagattgatagggaaattataaattcctgaagt 225

                                                                       
Query: 421 atttttacaaaattgaataattaatctcttgatctctaccttctctcttgctcttgctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 atttttacaaaattgaataattaatctcttgatctctaccttctctcttgctcttgctct 165

                                                                       
Query: 481 ctccttccccattcccttcccttccccctctctccatgtgctcatggccatggccggcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ctccttccccattcccttcccttccccctctctccatgtgctcatggccatggccggcct 105

                                                                       
Query: 541 ctacttctctgctctctccctctctctgtctttctctgcctctactaccctcttaacttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ctacttctctgctctctccctctctctgtctttctctgcctctactaccctcttaacttc 45

                     
Query: 601 cctccccatg 610
           ||||||||||
Sbjct: 44  cctccccatg 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)