BAC Information

Click to search

BAC

Clone NameMSMg01-512N22
Chromosome14 (Build37)
Map Location 17,591,501 - 17,592,091
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512N22.T7 (MSMg01no512_n22.b1)MSMg01-512N22.TJ (MSMg01no512_n22.g1)
ACCAG585729AG585730
length747741
length of high quality
(start - end)
626 (45 - 670)591 (72 - 662)
definitionCHROMAT_FILE: MSMg01no512_n22.b1 PHD_FILE: MSMg01no512_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:10 2005CHROMAT_FILE: MSMg01no512_n22.g1 PHD_FILE: MSMg01no512_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCCTTGGTCACAGCCTTCTCAGCAGCAGCCTGCTCCTCCTTCTCA
ATCTCCTCTGGGTCTCTGTAGAGGTAAAGATCAGGCATAACCTCCCATGG
GTGCTCATGGGAGATAGTACCTCGAATTCGGAGTACTTCCCTGGCCAGCA
TCCACCACATCAGACCCACTGAGTGAGCTCCCTTGTTGTTGCATGGAATG
GCAATGTCCACATAGCACAGGGGAGAATCTGTGTTACACAGAGCAATGGT
GGGCAGGTTGACATAAGAGGCCTCTGTGAGTGGCTGATGGTCAGCCCTGG
GATTGGTCACCACTAGAAGCCATGGCTCCCTGAAGGCTGCTTGGATCTGG
TTAGTGAAGGTCCCTGGTGTGAAGTGGCCAGCGATTGGAGTAGCTCCTGT
GGCAGCAGCAAACTTCAGCACAGCTCACTGGCCATTGTTCCTGGAGGAGA
TGATGCTGATGTTTCATTATAAAGATTTGCTTTTTGTAGTTCTTAAAAAT
GCTTATAATTGTGTTGGCATTTCCAGGACAGTCATATGAAATTGTAAATC
TTGTGATAATAGCCAACTAAGTTTCTCTAGTCAAAGACAATAACTTAGAT
TTCTTTACTCTTTATCTGACTGTTCTGCTTCATCTATCCATGCTTTTAAA
GTTTTAAAGGATTAGGAAAATGTATTTCAGTTTGATTCTTCTTAGAA
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTGCCATCGCAGAGAACAGCCTAATAT
CCCTTGCCCTTGATGGCTTCTATTACATTCTAGGGCCCTAAGAGAAATGG
GCTTGTCAGTATAAAATGCCTTAAAGGCCTCTCCCCCTTCAGAATTGTGG
AGGAGACATAGAATTGTTGACTGAGAGGAGGTGCTCTCCGTGCCCCCAGA
GACAGCATCAAAGGCAGACATTTTGAGCAAGCACAGATTTAATGCTCATC
TTCCTGCCATCTCTCCTCCCTGGCACAATGGCCTTCCCCTGGGACTGACT
CTCATCAAACTGACAGCACGATCATGGCATGATTCACCATTAGACCCAAG
GATTTTCCCGAAGACTAAGGTGGCTTTGAAAGATAATACACAGGCTCATT
TCTATGCTTGAAGCCTACAGTTTTTGCATCTTAGAAGTTGACTCTTTGAA
AATTCTCACATGGAGCCAGCTAATTCACTGGGTTCTTTTCTTAAACCCAT
GCTAAAGGCGATTGGATTTCATGAGAAACAAATAACAATTTCAAATTAGC
TACAAGGACCCCCATTTGTGTAGCTGGGGAAGGGACTGGTTGTACTGGCA
GTGTGTCTGAGTCCATGGTTAACTTAAAGTTCTTGTAGACAAAGCTGTCT
GACATTGGGCAAGCTTTTTGATCCCAGATGCCTCTGTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_n22.g1 MSMg01no512_n22.g1 CHROMAT_FILE:
MSMg01no512_n22.g1 PHD_FILE: MSMg01no512_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:10 2005
         (591 letters)



>mm_chr14_17591301_17592291
          Length = 991

 Score = 1143 bits (591), Expect = 0.0
 Identities = 591/591 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgccatcgcagagaacagcctaatatcccttgcccttgatggcttctattacattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttgccatcgcagagaacagcctaatatcccttgcccttgatggcttctattacattct 260

                                                                       
Query: 61  agggccctaagagaaatgggcttgtcagtataaaatgccttaaaggcctctcccccttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggccctaagagaaatgggcttgtcagtataaaatgccttaaaggcctctcccccttca 320

                                                                       
Query: 121 gaattgtggaggagacatagaattgttgactgagaggaggtgctctccgtgcccccagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattgtggaggagacatagaattgttgactgagaggaggtgctctccgtgcccccagag 380

                                                                       
Query: 181 acagcatcaaaggcagacattttgagcaagcacagatttaatgctcatcttcctgccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagcatcaaaggcagacattttgagcaagcacagatttaatgctcatcttcctgccatc 440

                                                                       
Query: 241 tctcctccctggcacaatggccttcccctgggactgactctcatcaaactgacagcacga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcctccctggcacaatggccttcccctgggactgactctcatcaaactgacagcacga 500

                                                                       
Query: 301 tcatggcatgattcaccattagacccaaggattttcccgaagactaaggtggctttgaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatggcatgattcaccattagacccaaggattttcccgaagactaaggtggctttgaaa 560

                                                                       
Query: 361 gataatacacaggctcatttctatgcttgaagcctacagtttttgcatcttagaagttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gataatacacaggctcatttctatgcttgaagcctacagtttttgcatcttagaagttga 620

                                                                       
Query: 421 ctctttgaaaattctcacatggagccagctaattcactgggttcttttcttaaacccatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctttgaaaattctcacatggagccagctaattcactgggttcttttcttaaacccatg 680

                                                                       
Query: 481 ctaaaggcgattggatttcatgagaaacaaataacaatttcaaattagctacaaggaccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaaaggcgattggatttcatgagaaacaaataacaatttcaaattagctacaaggaccc 740

                                                              
Query: 541 ccatttgtgtagctggggaagggactggttgtactggcagtgtgtctgagt 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccatttgtgtagctggggaagggactggttgtactggcagtgtgtctgagt 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)