BAC Information

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BAC

Clone NameMSMg01-513A11
Chromosome14 (Build37)
Map Location 36,369,992 - 36,370,644
singlet/doubletsinglet
Overlap geneGrid1
Upstream geneLdb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513A11.T7 (MSMg01no513_a11.b1)MSMg01-513A11.TJ (MSMg01no513_a11.g1)
ACCAG585850AG585851
length803745
length of high quality
(start - end)
106 (40 - 145)658 (70 - 727)
definitionCHROMAT_FILE: MSMg01no513_a11.b1 PHD_FILE: MSMg01no513_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:23 2005CHROMAT_FILE: MSMg01no513_a11.g1 PHD_FILE: MSMg01no513_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAGTTCCGATCTATATCCCATTTTCTGACTGGGTTTTTGGGGGGGGGGTT
TTGTTTTTGTTTTTGTTTTTTTTTTTGTTTTTTTTTGATTGTTTGTTTGT
TTGGGTTTTTTTGATTACCGCTATCTATCCGCTCCCCATTTACCCTCCCA
TCCCCTCCACACCAACTCCCACCCTCCCCCAATCACCCTTTACCCTCAAC
CCCAACCCCCCCACACACCAACACCATCCCACCAATTCACACACCCCCCC
CCCCTTTTTTTTTTCCCCACCCCCCCATACCCCCACTATCTCCTCCACAC
CTCTCACCCCCCCACCCCACCCCCACCAATCCCACACCCCCACCCCCCAC
CACCACCCCCAACACACCCCCCCCCCCACACACCACACCCCCCCCATCGC
CCCCCAACTCCCACTACATCTACTCACCCCCCCCTCACTACCATACTTAC
ACCCAACCCCACCACCCTCCCCACCTACCCATCCCCCACCCCATCCACAC
ACCTCCCCCCTACCTTTCCAACCCCCCCTCCTTTCCTTCTCCCACCCCCA
TCCCTCTTTTTCTCACTCCTTCCCCCCCTTTCTACCCCCCCCCTCACCAT
CCCTTTATCCCAATTCTAACCCCCCCTCCCCCCCTTCCTCCCCCACCACA
AAACTTACAAACCATCCCCCACCCCCCCCCCCACCCCCTACTCTCATCCC
CCCCCTCTTACTCCCCCAACCCTTCCCCCCCCCCCCACTCACTTACACAC
AAC
ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAATATCTATAGGGACTTTTAGGAGCCCTGG
GACACGGCAGGGAGGTGTCTGTGTTCATCTTCTATGTGAATGTTGCACAG
TTGAGAACAGGCTAAATACCTACATCTATGCATTCTTCTTGGAGTCTTAA
AAGCATTCCTTATTGGAAGAAATTACTGCCGATAAGGAATTGGTGTTGTA
TCCTAGTGTGACAGATTTCTGAAGTGGAGTTTCAGGAGTGGAAGATGGAG
GGAGCATGATCGACACACTGTCTCAAAGAAACCAGAGACATGACAGGACC
CTGAGGCTGGACTGAAAAGCTAGATCCAAGAGCAGAGTGGGAAGAAACCC
TAGCTTGGTGTGTTCATCACTTTTTGCACTGCTGCGATCATAGCATCTGA
CATAAGCAGCTTGAGGAAGGGACATTATTCTAGCCCTCAGTTTCAGGGGG
TTCCATTCTATAGCAGAGGTGGAATGACAGTGTTTAAACTCATTGATGGA
GTCATGTTCTGGTTGCCGTTCACATCACAGTGGGCCAGAAAGTGAAAAGC
AAGCCAAGAGCCAGGGCCTGCATATAACCTTCAAAGGCTTTCTGTAGTAA
CCTATGGCTCTGTAAAGGGTCCTGTCTTGCAAAGGTTTCAAAGTTTCCCA
AAATGGTACCACTGGCTAGGAAATAGNATATTCAAGCACGTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_a11.g1 MSMg01no513_a11.g1 CHROMAT_FILE:
MSMg01no513_a11.g1 PHD_FILE: MSMg01no513_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:23 2005
         (658 letters)



>mm_chr14_36369788_36370845
          Length = 1058

 Score = 1147 bits (593), Expect = 0.0
 Identities = 638/653 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   atctatagggacttttaggagccctgggacacggcagggaggtgtctgtgttcatcttct 64
           |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 atctgtagggacatttaggagccctgggacacggcagggaggtgactgtgttcatcttct 264

                                                                       
Query: 65  atgtgaatgttgcacagttgagaacaggctaaatacctacatctatgcattcttcttgga 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 atgtgaatgttgcacagttgagaacaggctaaatccctacatctatgcattcttcttgga 324

                                                                       
Query: 125 gtcttaaaagcattccttattggaagaaattactgccgataaggaattggtgttgtatcc 184
           ||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 325 gtcttaaaaacattccttattgaaagaaattactgccgataagaaattggtgttgtatcc 384

                                                                       
Query: 185 tagtgtgacagatttctgaagtggagtttcaggagtggaagatggagggagcatgatcga 244
           ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 385 tagtgtgacagatttctgaagtggaatttcaggagtggaagatggaggaagcatgatcga 444

                                                                       
Query: 245 cacactgtctcaaagaaaccagagacatgacaggaccctgaggctggactgaaaagctag 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 cacactgtctcaaagaaaccagagacatgacaggaccctgaggctggactgaaaagctgg 504

                                                                       
Query: 305 atccaagagcagagtgggaagaaaccctagcttggtgtgttcatcactttttgcactgct 364
           ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 505 atccaagagcaaagtgggaagaaaccctggcttggtgtgtacatcactttttgcactgct 564

                                                                       
Query: 365 gcgatcatagcatctgacataagcagcttgaggaagggacattattctagccctcagttt 424
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcaatcatagcatctgacataagcagcttgaggaagggacattattctagccctcagttt 624

                                                                       
Query: 425 cagggggttccattctatagcagaggtggaatgacagtgtttaaactcattgatggagtc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagggggttccattctatagcagaggtggaatgacagtgtttaaactcattgatggagtc 684

                                                                       
Query: 485 atgttctggttgccgttcacatcacagtgggccagaaagtgaaaagcaagccaagagcca 544
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgttctggttgccattcacatcacagtgggccagaaagtgaaaagcaagccaagagcca 744

                                                                       
Query: 545 gggcctgcatataaccttcaaaggctttctgtagtaacctatggctctgtaaagggtcct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gggcctgcatataaccttcaaaggctttctgtagtaacctatggctctgtaaagggtcct 804

                                                                
Query: 605 gtcttgcaaaggtttcaaagtttcccaaaatggtaccactggctaggaaatag 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtcttgcaaaggtttcaaagtttcccaaaatggtaccactggctaggaaatag 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)