BAC Information

Click to search

BAC

Clone NameMSMg01-513B14
Chromosome14 (Build37)
Map Location 94,201,509 - 94,249,609
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513B14.T7 (MSMg01no513_b14.b1)MSMg01-513B14.TJ (MSMg01no513_b14.g1)
ACCAG585903AG585904
length759770
length of high quality
(start - end)		645 (37 - 681)653 (68 - 720)
definitionCHROMAT_FILE: MSMg01no513_b14.b1 PHD_FILE: MSMg01no513_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:29 2005CHROMAT_FILE: MSMg01no513_b14.g1 PHD_FILE: MSMg01no513_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,201,509 - 94,202,149)(94,248,957 - 94,249,609)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACA
TGTATTCATTTCAGTATTTCTCACATTTTAAATAATAGTGTAAATATAAA
ATGCAATATTGTAAAATCTGATATAGGACTAAATATCAGTAGTTTGTGAT
GATTTTTTTAACAGAAAATACATAGTTGTTTACAAAATATTTTTACTAAG
ATATAGACATATTCTGAGGAGAGGTATGCCAATAAGGAAACCAAAAAGAA
CTTGGAAGTGCATGACATAAATCTGTGAGTAGCCAGTTAAAACGAAAGAC
ATTTTGAGATAAGTAAAAGTTAGAGAAGTTAGGGTAGATTTGCAAAGTAC
ATAAAGTGTGTTTTAATATGTTCCTATTATGTTTTGCAGATTACTATTTA
GACAGTTGAAAGAAAAACATTTGCAACCAGTACCAAGGAATCTTGGTTGA
GCATAACGTCTCTTATTCCCAGCAAGCAAGAAAGGGTCTGTCTGACATAC
ATGTGTACCATACTGCTTCTTAGACTGCTCTTGCTTCTTTCCAGCTGCTA
CTCTGGACTCTGAATTGTTTGAAGATAAGCACTATGGTTGTAGAATATTT
CTCTTAAAAGAGCACCTAAAACCCATTGTGCCTTTTTTTCCCAGGAAATG
TCATAGTCAGCCCTCTGAATGGTCTATTCAGTTCACTGTAGCAAATAATA
CCAAAGTATAAAAATATAGGAAAACACATCAAATCTATAGCTTGAGAAAA
CATCGTTAT

TTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTAGTTGGACTTGTTCCATGCACTCAAATATTTG
TAATTCTAGAGAGTAATTAGTAGGATAATGTCATTTTCACATCAATAGCT
ATTAATTATAAAGCTTAAAACATCTAATAATCATTTACATTAGTTCAAGA
AATTAATTTCTTCCAGGGCTATGTATCTTCAGATATATAGCTGGGGAACA
CTAGATTCTTAATGTAAAAATATAAAATTAAATGTGTTTCTTCAGAATGA
AAATAGATTCTTTGTAAGAGTCCAGTTAATACATAACTCTATGTTGACAT
ATACCCTTGAATCAGAAACTTCATTGTGATATTATTTCTAGGTGAATAGG
ACCAGATTAAATATATTAATGTAGTGTTTAGTTTTCTGGGATATATCTTA
AAAACCCACAAATAAGTTCCTGTAATTTCAAAGATTAAATACAACTAGTT
ATGCATATTGCTGGCATCAATAGTAATAAACTTTAATTTGTGAGATACAA
AATTATATGTTTTCTATACAGTCATGCATGTATCACATACAGTCGCTGAT
AGTTTTTCATCATTCTCTACCAAACACCCAAAGTTAAGGAACATTCCTAA
ACTAGGAAACCAGAATGAACTCTGTACGGTAAAAACATTATTAAAGAATG
TATAACATTCAAATATGTAGTTCAAGGTAAACTGCCATTTTGACAATCTT
CTTTGTTCCTTTGTGCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_b14.b1 MSMg01no513_b14.b1 CHROMAT_FILE:
MSMg01no513_b14.b1 PHD_FILE: MSMg01no513_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:29 2005
         (645 letters)



>mm_chr14_94201305_94202349
          Length = 1045

 Score = 1239 bits (641), Expect = 0.0
 Identities = 641/641 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacatgtattcatttcagtatttctcacattttaaataatagtgtaaatataaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacatgtattcatttcagtatttctcacattttaaataatagtgtaaatataaa 264

                                                                       
Query: 65  atgcaatattgtaaaatctgatataggactaaatatcagtagtttgtgatgattttttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcaatattgtaaaatctgatataggactaaatatcagtagtttgtgatgattttttta 324

                                                                       
Query: 125 acagaaaatacatagttgtttacaaaatatttttactaagatatagacatattctgagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagaaaatacatagttgtttacaaaatatttttactaagatatagacatattctgagga 384

                                                                       
Query: 185 gaggtatgccaataaggaaaccaaaaagaacttggaagtgcatgacataaatctgtgagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaggtatgccaataaggaaaccaaaaagaacttggaagtgcatgacataaatctgtgagt 444

                                                                       
Query: 245 agccagttaaaacgaaagacattttgagataagtaaaagttagagaagttagggtagatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agccagttaaaacgaaagacattttgagataagtaaaagttagagaagttagggtagatt 504

                                                                       
Query: 305 tgcaaagtacataaagtgtgttttaatatgttcctattatgttttgcagattactattta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcaaagtacataaagtgtgttttaatatgttcctattatgttttgcagattactattta 564

                                                                       
Query: 365 gacagttgaaagaaaaacatttgcaaccagtaccaaggaatcttggttgagcataacgtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacagttgaaagaaaaacatttgcaaccagtaccaaggaatcttggttgagcataacgtc 624

                                                                       
Query: 425 tcttattcccagcaagcaagaaagggtctgtctgacatacatgtgtaccatactgcttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcttattcccagcaagcaagaaagggtctgtctgacatacatgtgtaccatactgcttct 684

                                                                       
Query: 485 tagactgctcttgcttctttccagctgctactctggactctgaattgtttgaagataagc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagactgctcttgcttctttccagctgctactctggactctgaattgtttgaagataagc 744

                                                                       
Query: 545 actatggttgtagaatatttctcttaaaagagcacctaaaacccattgtgcctttttttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actatggttgtagaatatttctcttaaaagagcacctaaaacccattgtgcctttttttc 804

                                                    
Query: 605 ccaggaaatgtcatagtcagccctctgaatggtctattcag 645
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ccaggaaatgtcatagtcagccctctgaatggtctattcag 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no513_b14.g1 MSMg01no513_b14.g1 CHROMAT_FILE:
MSMg01no513_b14.g1 PHD_FILE: MSMg01no513_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:29 2005
         (653 letters)



>mm_chr14_94248757_94249809
          Length = 1053

 Score = 1201 bits (621), Expect = 0.0
 Identities = 645/653 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagttggacttgttccatgcactcaaatatttgtaattctagagagtaattagtaggata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 tagttggacttgttccatgcactcaaatatttgtaattctagagagtaattagtaggata 794

                                                                       
Query: 61  atgtcattttcacatcaatagctattaattataaagcttaaaacatctaataatcattta 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 793 atgtcattttcacatcaatagctattaattataaaccttaaaacatctaataatcattta 734

                                                                       
Query: 121 cattagttcaagaaattaatttcttccagggctatgtatcttcagatatatagctgggga 180
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 733 cattagttcaagaaattaatttcttccagggctatgtatctttagatatatagctgggaa 674

                                                                       
Query: 181 acactagattcttaatgtaaaaatataaaattaaatgtgtttcttcagaatgaaaataga 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 673 acactagattcttaatgtaaaaacataaaattaaatgtgtttcttcagaatgaaaataga 614

                                                                       
Query: 241 ttctttgtaagagtccagttaatacataactctatgttgacatatacccttgaatcagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttctttgtaagagtccagttaatacataactctatgttgacatatacccttgaatcagaa 554

                                                                       
Query: 301 acttcattgtgatattatttctaggtgaataggaccagattaaatatattaatgtagtgt 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 553 acttcattgtgatattatttccaggtgaataggaccagattaaatatattaatgtagtgt 494

                                                                       
Query: 361 ttagttttctgggatatatcttaaaaacccacaaataagttcctgtaatttcaaagatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttagttttctgggatatatcttaaaaacccacaaataagttcctgtaatttcaaagatta 434

                                                                       
Query: 421 aatacaactagttatgcatattgctggcatcaatagtaataaactttaatttgtgagata 480
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 433 aatacaactagttatgcatattgctggcatcaataataataaactttaatttatgagata 374

                                                                       
Query: 481 caaaattatatgttttctatacagtcatgcatgtatcacatacagtcgctgatagttttt 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 373 caaaattatatgttttctatacagtcatgcatgtatcacatacagttgctgatagttttt 314

                                                                       
Query: 541 catcattctctaccaaacacccaaagttaaggaacattcctaaactaggaaaccagaatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 catcattctctaccaaacacccaaagttaaggaacattcctaaactaggaaaccagaatg 254

                                                                
Query: 601 aactctgtacggtaaaaacattattaaagaatgtataacattcaaatatgtag 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aactctgtacggtaaaaacattattaaagaatgtataacattcaaatatgtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |