BAC Information

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BAC

Clone NameMSMg01-513J09
Chromosome14 (Build37)
Map Location 28,751,070 - 28,918,393
singlet/doubletdoublet
Overlap geneErc2
Upstream geneAppl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513J09.T7 (MSMg01no513_j09.b1)MSMg01-513J09.TJ (MSMg01no513_j09.g1)
ACCAG586272AG586273
length753760
length of high quality
(start - end)		626 (58 - 683)599 (71 - 669)
definitionCHROMAT_FILE: MSMg01no513_j09.b1 PHD_FILE: MSMg01no513_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:08 2005CHROMAT_FILE: MSMg01no513_j09.g1 PHD_FILE: MSMg01no513_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,917,769 - 28,918,393)(28,751,070 - 28,751,668)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AACAGTCTCCCAGTATGTCTCCAAACTGTTCCCACCACATGTTGCTCACA
TGCTGAAGTGAAAACCGACCACGAACGAATGTGTTTGTGTGACTGGGCAA
CAAATTATTAACTAAACGGTTCTCATTTGCTTTGGCTGATAGGATTAGAG
GCTTGGGCCGAATCTACGTAAACCATAATTGCCCACCAATGTGAATCTTA
AACTTTGCGGAGTCTATAATAAAAATAAGGCAATTAAATAGCATCCAAAT
AGTTATGATCCTTTAAGCCTTTGAACTCTTATGGACTTTAGCATTCTTGG
GATGGCATTGACTTTGGGAAGGGGGAAAAGAGATGGGCAGGGCAGACTCT
TATGCAGCTTTGAAAAGGCACCTCCCAATTCTCTCTGAGTTCCACATTCG
TTTCCTGAAGGTGACATTCCCATGTGTAGCCCTACAGAGTCTATGAGGGA
AGGTTGATGTTTAGTGGAATTCTTAGCAAGACAGTCCAGAGTTCTGCCAC
CACAAACTTGAGTGACATAGAATTGGGGGCGGAGATACAAAAAAATGAGA
AATACAACCCAGTGCATTGTGCAGTTGGTCACAAAATGAGAAGGGATCAT
ACTCTATCATATTTTTGTGTTAAAGGGAATTACACACACACCACCCATAT
ATGGGAAGAGCTAAGGGAAAGAACTGGGAAATCGTGTTGGTTAAGAAATA
TGA

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCTTTAAAGTAGTGACAGAAATTGTTTAA
CATGATTTCTTGGTTATATGCTGCCTTTGGAATGGCAAGAAAGCAGAGTC
AAGAAAATCCAGCCACTCTGTTAAATCTTTATTTATTTTCTAAGGAGTGG
GAGAGCATTTTTATCCAAGCGATGAGAACCTCCTGGAGTTGATTGACTTA
AATTAGCTTGATTGCTTTTTATCAATCACAGCTGTGCTGTTTAGCATAAA
AATGCAAAACATCTAAAAAGCATTTGCCTTGCAGCGTGCTAGAAAGATGT
TTTTAGTTAGTTTTAAGATGTTTCAAATTTTTATTCTGCACAGATTCTCT
AAGAATGTATCCAGAACATATCTAGTTACAGAGAATTAGTACAGATATTG
TAAACTTGGAGAAAATGAATTAAAGAAAATATGCTGTTTTATGAATTACA
TATTTAGAATTTGGACTTTTTTTTGCTTTTAAATGTCTCTTATAAGTTAA
ACAGTTCAGCAATATTTGTTGCAGTGACCAAGCCATGCAATTGCTGCTAA
ACATTAAGAAACAGTCCTTGGGACTTTTCACATAATACACCATTTGGTCT
TCCTTGAGGAGCTGTTGACATGGTTCAATGGGAACTGTTATAACGTCAGG
TGAAACCCACTTTGTCCTGAAATCCCATGAATGAGGTTCAACTCATCCTT
TGCCTGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_j09.b1 MSMg01no513_j09.b1 CHROMAT_FILE:
MSMg01no513_j09.b1 PHD_FILE: MSMg01no513_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:08 2005
         (626 letters)



>mm_chr14_28917569_28918594
          Length = 1026

 Score = 1178 bits (609), Expect = 0.0
 Identities = 621/625 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccagtatgtctccaaactgttcccaccacatgttgctcacatgctgaagtgaaaaccg 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 825 tcccagtatgtctccaaactgttcccaccacatgttgctcacgtgctgaagtgaaaaccg 766

                                                                       
Query: 61  accacgaacgaatgtgtttgtgtgactgggcaacaaattattaactaaacggttctcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 accacgaacgaatgtgtttgtgtgactgggcaacaaattattaactaaacggttctcatt 706

                                                                       
Query: 121 tgctttggctgataggattagaggcttgggccgaatctacgtaaaccataattgcccacc 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 705 tgctttggctgataggattagaggcttgggccgaatctatgtaaaccataattgcccacc 646

                                                                       
Query: 181 aatgtgaatcttaaactttgcggagtctataataaaaataaggcaattaaatagcatcca 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aatgtgaatcttaaactttgcagagtctataataaaaataaggcaattaaatagcatcca 586

                                                                       
Query: 241 aatagttatgatcctttaagcctttgaactcttatggactttagcattcttgggatggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aatagttatgatcctttaagcctttgaactcttatggactttagcattcttgggatggca 526

                                                                       
Query: 301 ttgactttgggaagggggaaaagagatgggcagggcagactcttatgcagctttgaaaag 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttgacttcgggaagggggaaaagagatgggcagggcagactcttatgcagctttgaaaag 466

                                                                       
Query: 361 gcacctcccaattctctctgagttccacattcgtttcctgaaggtgacattcccatgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gcacctcccaattctctctgagttccacattcgtttcctgaaggtgacattcccatgtgt 406

                                                                       
Query: 421 agccctacagagtctatgagggaaggttgatgtttagtggaattcttagcaagacagtcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agccctacagagtctatgagggaaggttgatgtttagtggaattcttagcaagacagtcc 346

                                                                       
Query: 481 agagttctgccaccacaaacttgagtgacatagaattgggggcggagatacaaaaaaatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agagttctgccaccacaaacttgagtgacatagaattgggggcggagatacaaaaaaatg 286

                                                                       
Query: 541 agaaatacaacccagtgcattgtgcagttggtcacaaaatgagaagggatcatactctat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agaaatacaacccagtgcattgtgcagttggtcacaaaatgagaagggatcatactctat 226

                                    
Query: 601 catatttttgtgttaaagggaatta 625
           |||||||||||||||||||||||||
Sbjct: 225 catatttttgtgttaaagggaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no513_j09.g1 MSMg01no513_j09.g1 CHROMAT_FILE:
MSMg01no513_j09.g1 PHD_FILE: MSMg01no513_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:08 2005
         (599 letters)



>mm_chr14_28750870_28751868
          Length = 999

 Score = 1143 bits (591), Expect = 0.0
 Identities = 597/599 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctttaaagtagtgacagaaattgtttaacatgatttcttggttatatgctgcctttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctttaaagtagtgacagaaattgtttaacatgatttcttggttatatgctgcctttgg 260

                                                                       
Query: 61  aatggcaagaaagcagagtcaagaaaatccagccactctgttaaatctttatttattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggcaagaaagcagagtcaagaaaatccagccactctgttaaatctttatttattttc 320

                                                                       
Query: 121 taaggagtgggagagcatttttatccaagcgatgagaacctcctggagttgattgactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaggagtgggagagcatttttatccaagcgatgagaacctcctggagttgattgactta 380

                                                                       
Query: 181 aattagcttgattgctttttatcaatcacagctgtgctgtttagcataaaaatgcaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattagcttgattgctttttatcaatcacagctgtgctgtttagcataaaaatgcaaaac 440

                                                                       
Query: 241 atctaaaaagcatttgccttgcagcgtgctagaaagatgtttttagttagttttaagatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctaaaaagcatttgccttgcagcgtgctagaaagatgtttttagttagttttaagatg 500

                                                                       
Query: 301 tttcaaatttttattctgcacagattctctaagaatgtatccagaacatatctagttaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcaaatttttattctgcacagattctctaagaatgtatccagaacatatctagttaca 560

                                                                       
Query: 361 gagaattagtacagatattgtaaacttggagaaaatgaattaaagaaaatatgctgtttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaattagtacagatattgtaaacttggagaaaatgaattaaagaaaatatgctgtttt 620

                                                                       
Query: 421 atgaattacatatttagaatttggacttttttttgcttttaaatgtctcttataagttaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 atgaattacatatttagaatttggacttttttttgcttttaaatgtctcttatacgttaa 680

                                                                       
Query: 481 acagttcagcaatatttgttgcagtgaccaagccatgcaattgctgctaaacattaagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagttcagcaatatttgttgcagtgaccaagccatgcaattgctgctaaacattaagaa 740

                                                                      
Query: 541 acagtccttgggacttttcacataatacaccatttggtcttccttgaggagctgttgac 599
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagtccttgggatttttcacataatacaccatttggtcttccttgaggagctgttgac 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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