Query= MSMg01no513_o23.b1 MSMg01no513_o23.b1 CHROMAT_FILE:
MSMg01no513_o23.b1 PHD_FILE: MSMg01no513_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:37 2005
(638 letters)
>mm_chr14_22068906_22069946
Length = 1041
Score = 1147 bits (593), Expect = 0.0
Identities = 625/637 (98%), Gaps = 3/637 (0%)
Strand = Plus / Plus
Query: 5 gaattctgcagtcttcatcataatctaattgtagaacatttatatcatcactaacagaca 64
||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattctgcagccgtcatcataatctaattgtagaacatttatatcatcactaagagaca 264
Query: 65 tcttgtgtccattagcactgcccctggagttcatcttctgctcacttgcttctctcagta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttgtgtccattagcactgcccctggagttcatcttctgctcacttgcttctctcagta 324
Query: 125 tagcattcgagtgtcatactacaagaacttccaatgtttctagtcagacagctaggatgc 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 tagcattcgagtgtcatactacaagaactttcaatgtttctagtcagacagctaggatgc 384
Query: 185 ttttctttgtttgttggcaaatataatgggagtggtatgtatatttttgtcctttgttct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttctttgtttgttggcaaatataatgggagtggtatgtatatttttgtcctttgttct 444
Query: 245 tgcctatttttctactgcaggtcttcaagagaagatcttttggctttcattctaatttat 304
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 tgcctatttttctactgcaggtcttcaagagaagatcttttggcttccattctaatttat 504
Query: 305 ttcttcagtgtatgcatgttttagagttggttcttaaaatgccagtttttttctgatttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcttcagtgtatgcatgttttagagttggttcttaaaatgccagtttttttctgatttg 564
Query: 365 tgtaaaaatgcaataaatgggatttcagggggtggtttttgtatttggggggtaggatgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtaaaaatgcaataaatgggatttcagggggtggtttttgtatttggggggtaggatgg 624
Query: 425 tgcaaagtgatcccccc---ttttccttccagtctttaccctgggagacctgttttcaca 481
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcaaagtgaccccccccccttttccttccagtctttaccctgggagacctgttttcaca 684
Query: 482 tgtatttatatatcccatcagtcattctcagaacaacttgggtatctcgtctgtgtagag 541
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtatttatatatcccatcaattattctcagaacaacttgggtatctcgtctgtgtagag 744
Query: 542 agttatcctctgagcccaggagcttgactgcaccattgtgtttcattgtttggcctcctt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agttatcctctgagcccaggagcttgactgcaccattgtgtttcattgtttggcctcctt 804
Query: 602 gcttacagatccttaaagctatagagtttaacttact 638
|||||||||||||||||||| ||||||||||||||||
Sbjct: 805 gcttacagatccttaaagctctagagtttaacttact 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1041
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1031
Effective search space: 647468
Effective search space used: 647468
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_o23.g1 MSMg01no513_o23.g1 CHROMAT_FILE:
MSMg01no513_o23.g1 PHD_FILE: MSMg01no513_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:38 2005
(620 letters)
>mm_chr14_22200397_22201416
Length = 1020
Score = 1162 bits (601), Expect = 0.0
Identities = 607/609 (99%)
Strand = Plus / Minus
Query: 12 tcactgagacattctcttaaaatatactgttagataaaataaagtataagaaataggcca 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 tcactgagacattctcttaaaatatactgttagataaaataaagtataagaaataggcca 961
Query: 72 aggatagagctcaccaacacacagtacttgtttagcatgcaaaaggccctaaataggagt 131
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 960 aggatagagctcaccaacacacagcacttgtttagcatgcaaaaggccctaaataggagt 901
Query: 132 tctagtattgggttgggcatgagtcagaggcaggtgagttccagagacagccaggaatac 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tctagtattgggttgggcatgagtcagaggcaggtgagttccagagacagccaggaatac 841
Query: 192 acagactgtcaaaaataaaattcctagtattgcaaaaacaaatcagaagtgacagaaaaa 251
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 840 acagactgtcaaaaataaaattcctagtattgcaaaaacaaatcaaaagtgacagaaaaa 781
Query: 252 attcagaagaaacacttctggatttgacttgttcataatcgaataaatgtattttattct 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 attcagaagaaacacttctggatttgacttgttcataatcgaataaatgtattttattct 721
Query: 312 gatgcaagggttttatatgtaaaaggtattgttttgaaaagaaagagatttctggactga 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gatgcaagggttttatatgtaaaaggtattgttttgaaaagaaagagatttctggactga 661
Query: 372 gacccccccaatttaaaaagtaaacaagctttatcaattggcttttcataaattataacc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gacccccccaatttaaaaagtaaacaagctttatcaattggcttttcataaattataacc 601
Query: 432 ttgaaaggaaaatcacgtccccagggtgcaagggaggagtatgggagtcacactgtcgaa 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttgaaaggaaaatcacgtccccagggtgcaagggaggagtatgggagtcacactgtcgaa 541
Query: 492 ggcacatgactggggatggctcgctgtagaagaaaaatacaactttgttgccattaatct 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggcacatgactggggatggctcgctgtagaagaaaaatacaactttgttgccattaatct 481
Query: 552 ctttaaccctggatttatcacagagtcctcacagtacctgcagccactatggtgtcatct 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctttaaccctggatttatcacagagtcctcacagtacctgcagccactatggtgtcatct 421
Query: 612 cgcccttgt 620
|||||||||
Sbjct: 420 cgcccttgt 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
