Query= MSMg01no514_e18.b1 MSMg01no514_e18.b1 CHROMAT_FILE:
MSMg01no514_e18.b1 PHD_FILE: MSMg01no514_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:08 2005
(596 letters)
>mm_chr14_80273889_80274883
Length = 995
Score = 984 bits (509), Expect = 0.0
Identities = 561/593 (94%), Gaps = 24/593 (4%)
Strand = Plus / Plus
Query: 4 ggaattctcttattattcccagcttgatgaaagcacagtggattacagctagccactcaa 63
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaattattattcccagcttgatgaaagcacagtggattacagctagccactcaa 263
Query: 64 gatcacagcttggctctgtcatcccctacacaatgttaggcaaaattttgatttatttat 123
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 ggtcacagcttggctctgtcatcccctacacaatgttaggcaaaattttga-ttatttat 322
Query: 124 ttatctttttttgccttggttcattcatcttcaaaacaagggaacggatgcctgcttcat 183
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 323 ttatctatttttgccttggttcattcatcttcaaaacaagggaacgaatgcctgcttcat 382
Query: 184 aagggaacggatgcctgcttcataagggaacggatacctgcttcatagcactgctatttt 243
||||||||||||| ||||||||||||||||||||||||
Sbjct: 383 aagggaacggatg-----------------------cctgcttcatagcactgctatttt 419
Query: 244 attggtacttggaagagttagtggtagaaagcactcactgaatggcagctattaggatat 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attggtacttggaagagttagtggtagaaagcactcactgaatggcagctattaggatag 479
Query: 304 tctaagccttattctattttgtgaaaacacagacagatcaacttagacagacaatacact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tctaagccttattctattttgtgaaaacacagacagatcaacttagacagacaatacact 539
Query: 364 gggacttctttttactaaggtaatatgatgtcatacataccattggacatgggagggaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gggacttctttttactaaggtaatatgatgtcatacataccattggacatgggagggaga 599
Query: 424 gatatagatatagatatagatgatatagatatatatctatatagatatataggtagatat 483
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 600 gatatagatatagatatagatgatatagatatatatttatatagatatataggtagatat 659
Query: 484 ccaaattatcaaggacactggttgttgggtgaaggtaaaggtgtgctggggttttatcat 543
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ccaaattttcaaggacactggttgttgggtgaaggtaaaggtgtgctggggttttatcat 719
Query: 544 caaaagctgaaggattgaagaatgaacatcacccctcaggagtccactgaggc 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 caaaagctgaaggattgaagaatgaacatcacccctcaggagtccactgaggc 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 995
Length adjustment: 10
Effective length of query: 586
Effective length of database: 985
Effective search space: 577210
Effective search space used: 577210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_e18.g1 MSMg01no514_e18.g1 CHROMAT_FILE:
MSMg01no514_e18.g1 PHD_FILE: MSMg01no514_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:08 2005
(589 letters)
>mm_chr14_80404618_80405606
Length = 989
Score = 1108 bits (573), Expect = 0.0
Identities = 585/589 (99%)
Strand = Plus / Minus
Query: 1 aactctcctcttcagctgggaaattataaaatttgcatttttttccaaatggaaacaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aactctcctcttcagctgggaaattataaaatttgcatttttttccaaatggaaacaagc 730
Query: 61 catctatttactcaaaaactgagcagtgtatgagtttgtatctcgctcacaaatttctct 120
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 729 tatctatttactcaaaaactgagcagtgtatgagtttgtatctcactcacaaatttctct 670
Query: 121 aagcttaccacttgcaaagaaaaaaaattaaagtatctgaagtttctttaagatattcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aagcttaccacttgcaaagaaaaaaaattaaagtatctgaagtttctttaagatattcag 610
Query: 181 gctcacacttcgatgccactgcatattttaaagtgacaggtttgaaagattctgttttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gctcacacttcgatgccactgcatattttaaagtgacaggtttgaaagattctgttttcc 550
Query: 241 ttctgtcccctttgaactaccccaaggggatcctagcacaattaacatttttcattacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttctgtcccctttgaactaccccaaggggatcctagcacaattaacatttttcattacta 490
Query: 301 ctattgccttgcagaacgagctttgtcagccaactggctgagccttttaatgatctcatc 360
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctattgccttgcagagtgagctttgtcagccaactggctgagccttttaatgatctcatc 430
Query: 361 ggaaggccagcccaaagctcacctatggagcatcagcctgaagggactctttatgaaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggaaggccagcccaaagctcacctatggagcatcagcctgaagggactctttatgaaact 370
Query: 421 gaagaggagagagcagttgtcagtctggagagattctagccatgcctcaaaagttcacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaagaggagagagcagttgtcagtctggagagattctagccatgcctcaaaagttcacat 310
Query: 481 cagctggtgacagctgagtgtatctgctccacacacaagctaccctactgatcttcatga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cagctggtgacagctgagtgtatctgctccacacacaagctaccctactgatcttcatga 250
Query: 541 acaaacttgttctcagtattagatgttcctgtaatcgagatttgacccg 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 acaaacttgttctcagtattagatgttcctgtaatcgagatttgacccg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
