BAC Information

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BAC

Clone NameMSMg01-514I16
Chromosome14 (Build37)
Map Location 73,531,753 - 73,532,390
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149
Downstream geneRcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514I16.T7 (MSMg01no514_i16.b1)MSMg01-514I16.TJ (MSMg01no514_i16.g1)
ACCAG587001AG587002
length742753
length of high quality
(start - end)
646 (63 - 708)647 (68 - 714)
definitionCHROMAT_FILE: MSMg01no514_i16.b1 PHD_FILE: MSMg01no514_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:29 2005CHROMAT_FILE: MSMg01no514_i16.g1 PHD_FILE: MSMg01no514_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGG
TTCTGTGCGCCCAGGGTTAGTAACCAGGGTGGAGCGAGAGGCCCTGAGTG
TGTCCTTTCCTTCAGAGCTTTGATTTTCAGCTAAAACTGAGAGTGGCGAT
GAGATCAGCCGGCTTCCGGACAGCTACAGATGACCACAGGACTCCCCCCT
TCCACCGCCTTACTTCAGTTCAGTTCTTACGAGGCAGCCTGCTACCGGCT
GTTGGTGTGAAGAGAAGACAGGGACAGAAAGTAAACATTTTTAGGCAAAC
CAACCAATAAGTCTGCAGATCTGGCAACAAAATCAGCGTTCATCACTTAA
AATATGTGTTGCGAAAGTCTCAGTCATTTCTGGGAAATTCTGTGGAGTAG
CCATTCCAAACTTACTTTAAATGGCGATTGAGATTGGAAAATTCACACTC
TCTTGCGTCTTCTCTGTATTCTCATGGTTAGCAACCTATGCATGAGTTGG
TTAGAGCTGGGCTCTTGCTCTTTGGGATTCTGCAGGGAGAGTGCCACAGC
ACCACAGGATAGGGAATTCATTTCTCCATTATTTCTCTTCATTGCTTAAA
CAAACAAACAACCAAACCAAACAACAACAATAAAAAATACGTAATTGTCA
TACTTTTATGTATGTGTGTATGTATATATTACTTAAGATGGAGTTCTGTA
CCTCTTGATTTCCACTTCAGTATAATAAACAGTGTGCTCACT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATAAAAACACTGAAATGGAAGCCATAAAATAC
ACATGGAGGGCCTTACTCTCTGTGAGTTTATGTGAACTTTGATCATGGTG
ATTTAGAGGGTACTCTTTTCTTGACCTTCCAACTCATCTGGCTCGTACAC
TTTTTCTGTCTCCTCTTCTGTGGGGTCCCATGATCCCTGAGGGGAGAGAT
TGATGGGGACTTCCCATTTAGGACATTCCCTTGGAGTGTTCCAAGGTCTT
CTACTTTCTGCATCATGTCTGGCTGTGGGTCTATGTATTTTTCTCATCTG
CTGTAAGAGAAGACTTCCCTGAAAATGTCTGAGCAAGGCACTGATATATA
AGTATAGCGAATGTCATTAGTAGTTTTGTTTTATTGCCATACTCTTTTAG
TGGAATAGTAACATTTGGTTTTATCCTAGGAGCTTGGGCTATCTAATCTC
AGGTTCTTAGTCATTCAAGCAAAGTTGGGCATAGGTTCCATCTTGTGGAG
TGGGCTTTCAGTCAAATCGAATGTTGGTTGGTTACTCAAACAAACATTGT
GCCACCATTGCCCTAGCAGATCTTGTAGGTAGGACACCATGTAGATCAAA
CAGTTTGTAGCTGAGTTGGTGGTTACATTTCTCTTTTGGTAGTGCAGAGT
ACCTTCCTATAGCAAAGATGCTAGACTGTAGGGATGAAGACATTATGTAG
GCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_i16.b1 MSMg01no514_i16.b1 CHROMAT_FILE:
MSMg01no514_i16.b1 PHD_FILE: MSMg01no514_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:29 2005
         (646 letters)



>mm_chr14_73531553_73532598
          Length = 1046

 Score = 1168 bits (604), Expect = 0.0
 Identities = 632/646 (97%), Gaps = 8/646 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggttagtaaccagggtggagcgagaggccctgagtgtgtcctttccttcagagctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggttagtaaccagggtggagcgagaggccctgagtgtgtcctttccttcagagctttg 260

                                                                       
Query: 61  attttcagctaaaactgagagtggcgatgagatcagccggcttccggacagctacagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttcagctaaaactgagagtggcgatgagatcagccggcttccggacagctacagatg 320

                                                                       
Query: 121 accacaggactccccccttccaccgccttacttcagttcagttcttacgaggcagcctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accacaggactccccccttccaccgccttacttcagttcagttcttacgaggcagcctgc 380

                                                                       
Query: 181 taccggctgttggtgtgaagagaagacagggacagaaagtaaacatttttaggcaaacca 240
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccggctgttggcgcgaagagaagacagggacagaaagtaaacatttttaggcaaacca 440

                                                                       
Query: 241 accaataagtctgcagatctggcaacaaaatcagcgttcatcacttaaaatatgtgttgc 300
           |||        |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 acc--------tgcagatctggcaacaaaatcagcgttcgtcacttaaaatatgtgttgc 492

                                                                       
Query: 301 gaaagtctcagtcatttctgggaaattctgtggagtagccattccaaacttactttaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaaagtctcagtcatttctgggaaattctgtggagtagccattccaaacttactttaaat 552

                                                                       
Query: 361 ggcgattgagattggaaaattcacactctcttgcgtcttctctgtattctcatggttagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 553 ggcgattgagattggaaaattcacactctcttgcgtcttctctgtattctcgtggttagc 612

                                                                       
Query: 421 aacctatgcatgagttggttagagctgggctcttgctctttgggattctgcagggagagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aacctatgcatgagttggttagagctgggctcttgctctttgggattctgcagggagagt 672

                                                                       
Query: 481 gccacagcaccacaggatagggaattcatttctccattatttctcttcattgcttaaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gccacagcaccacaggatagggaattcatttctccattatttctcttcattgcttaaaca 732

                                                                       
Query: 541 aacaaacaaccaaaccaaacaacaacaataaaaaatacgtaattgtcatacttttatgta 600
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aacaaacaaccaaataaaacaacaacaataaaaaatacgtaattgtcatacttttatgta 792

                                                         
Query: 601 tgtgtgtatgtatatattacttaagatggagttctgtacctcttga 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tgtgtgtatgtatatattacttaagatggagttctgtacctcttga 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)