BAC Information

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BAC

Clone NameMSMg01-514L06
Chromosome14 (Build37)
Map Location 78,935,413 - 79,002,988
singlet/doubletdoublet
Overlap geneAkap11, Dgkh
Upstream geneD230005D02Rik, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180
Downstream geneLOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514L06.T7 (MSMg01no514_l06.b1)MSMg01-514L06.TJ (MSMg01no514_l06.g1)
ACCAG587124AG587125
length735742
length of high quality
(start - end)		694 (42 - 735)655 (74 - 728)
definitionCHROMAT_FILE: MSMg01no514_l06.b1 PHD_FILE: MSMg01no514_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:42 2005CHROMAT_FILE: MSMg01no514_l06.g1 PHD_FILE: MSMg01no514_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,935,413 - 78,936,103)(79,002,334 - 79,002,988)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGAGGCTTGAGAAGGCTAGCAAATCTCTCACTACAGTTCTGGGCCTCCA
ACTTCAGAATCTTCAACAACTGAGAAACATCACTGGGCACAGAGTATATA
CTGCCAATTCCTTTCCAGGCAGATCAGTTGAGCAGTTCTGTAGCTATCTA
CATTAGCCACAGCTCAGCTTATAAACCCACGTCTTCCCCAATTCCCTCAT
ATCCCTTCATCCCTCATAAGTCAGTTACTAACTACACAACTAATTGCTTA
ATTTACTGCCAACCTATGATTCACAGTCCTGCCTGGAAAACACAATCAAG
TATGAATAATCAGGTTATTCCTTGAAAAAAATGCTTCTATAGTTTGAAAG
ATTAGGTGGCACTATTGAAAATGACATCAATCATACTAGGCTGCCTTTTA
CCAGCACACACACCAACACATACACACACACACACCAAGCAAACGCAAAG
ACATTAAAACAAAATCACCTTTGCATGAATAAATACTCCATCTTTCCTGA
TGCCCTTATTTTATATATTTTCATACATAACAAAATTGAGTACCAATATA
AATAACACTGCTAAAAAGGTGAGAAAGATGCAAAGGAAAACAAGCGATTT
AGGAGCAAATGGATAATCACAAGGCTATAAAAGAACTGCGAATATTAACT
CCAGTATGCGCCAAGGCCATTAGCGATGTGTCTCA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTTTATTTCCACTTACGCAAGTCTGT
TTCCCTTCTTACTACTTAAAGTTATGGATGAGCCAGCAGTGCAGCCCTCT
GAGCCAGTCAGTCCGTCTTGTGACTATGATACAGAAACAGATGAAGCTAA
AGAGGACGACGCGAAAGAGTCGCTATCAGGTGAGAAGTCAATGATGACGT
CATCAGGAAAGCTCAGTTACAACTGGCTTTGCATTTATTTAATTTTAAGT
ATGAAATGAACTGTTGAATTTCTATTTTTCTAAAGGCCTTTGGGCAGTTT
GTGTTATTCATGAACACTAAAATAATAATGGCAACGTATGAGTTAGGTTG
ACAAGTATTCTTATATCTCTTGTGAGATCTAAGAGATATCTAGAGACCAA
CAATAAACTAAGTGTTATGGGATGATTGAGTGTCTTAGAAGAAATAGCCA
GGTTTCCCCACTTTAGCGTGGGTTGCTCTCAGATTTCTTGGGAAACTGCG
AGAAAGCTGCTGGCCTTTGCTGCATCAAGCTTGGCCTTTGACGGATTCAG
CAGAGCTTTATATTCTGCTGATTGACCAATGCTTGTTGCGAAGCTAAGCT
TTAAAACCAAAAGCCTTCTAACTACAACTCTGTCTCTACCAAATTACTTT
CTGCCTAGAAGTGATTGTTGCTTGAAGATTAGTAACTGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_l06.b1 MSMg01no514_l06.b1 CHROMAT_FILE:
MSMg01no514_l06.b1 PHD_FILE: MSMg01no514_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:42 2005
         (694 letters)



>mm_chr14_78935210_78936303
          Length = 1094

 Score = 1290 bits (667), Expect = 0.0
 Identities = 685/691 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagaggcttgagaaggctagcaaatctctcactacagttctgggcctccaactt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagaggcttgagaaggctagcaaatctctcactacagttctgggcctccaactt 263

                                                                       
Query: 64  cagaatcttcaacaactgagaaacatcactgggcacagagtatatactgccaattccttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagaatcttcaacaactgagaaacatcactgggcacagagtatatactgccaattccttt 323

                                                                       
Query: 124 ccaggcagatcagttgagcagttctgtagctatctacattagccacagctcagcttataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaggcagatcagttgagcagttctgtagctatctacattagccacagctcagcttataa 383

                                                                       
Query: 184 acccacgtcttccccaattccctcatatcccttcatccctcataagtcagttactaacta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acccacgtcttccccaattccctcatatcccttcatccctcataagtcagttactaacta 443

                                                                       
Query: 244 cacaactaattgcttaatttactgccaacctatgattcacagtcctgcctggaaaacaca 303
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 cacaactaattgcttaatttactgccaacctatgattcacaatcctgcctggaaaacaca 503

                                                                       
Query: 304 atcaagtatgaataatcaggttattccttgaaaaaaatgcttctatagtttgaaagatta 363
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atcaagtatgaataaccaggttattccttgaaaaaaatgcttctatagtttgaaagatta 563

                                                                       
Query: 364 ggtggcactattgaaaatgacatcaatcatactaggctgccttttaccagcacacacacc 423
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggtgggactattgaaaatgacatcaatcatactaggctgccttttaccagcacacacacc 623

                                                                       
Query: 424 aacacatacacacacacacaccaagcaaacgcaaagacattaaaacaaaatcacctttgc 483
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 624 aacacatacacacacacacaccaagcaaacacaaagacattaaaacaaaatcacctttgc 683

                                                                       
Query: 484 atgaataaatactccatctttcctgatgcccttattttatatattttcatacataacaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgaataaatactccatctttcctgatgcccttattttatatattttcatacataacaaa 743

                                                                       
Query: 544 attgagtaccaatataaataacactgctaaaaaggtgagaaagatgcaaaggaaaacaag 603
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 744 attgagtaccaatataaataacactgctaacaaggtgagaaagatgcaaaggaaaacaag 803

                                                                       
Query: 604 cgatttaggagcaaatggataatcacaaggctataaaagaactgcgaatattaactccag 663
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cgatttagaagcaaatggataatcacaaggctataaaagaactgcgaatattaactccag 863

                                          
Query: 664 tatgcgccaaggccattagcgatgtgtctca 694
           |||||||||||||||||||||||||||||||
Sbjct: 864 tatgcgccaaggccattagcgatgtgtctca 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_l06.g1 MSMg01no514_l06.g1 CHROMAT_FILE:
MSMg01no514_l06.g1 PHD_FILE: MSMg01no514_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:42 2005
         (655 letters)



>mm_chr14_79002134_79003188
          Length = 1055

 Score = 1236 bits (639), Expect = 0.0
 Identities = 651/655 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttatttccacttacgcaagtctgtttcccttcttactacttaaagttatggatgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 attttatttccacttacgcaagtctgtttcccttcttactacttaaagttatggatgagc 796

                                                                       
Query: 61  cagcagtgcagccctctgagccagtcagtccgtcttgtgactatgatacagaaacagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cagcagtgcagccctctgagccagtcagtccgtcttgtgactatgatacagaaacagatg 736

                                                                       
Query: 121 aagctaaagaggacgacgcgaaagagtcgctatcaggtgagaagtcaatgatgacgtcat 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 735 aagctaaagaggacgacgcgaaagagtcgctatcaggtgagaagtcgatgatgacgtcat 676

                                                                       
Query: 181 caggaaagctcagttacaactggctttgcatttatttaattttaagtatgaaatgaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 675 caggaaagctcagttacaactggctttgcatttatttaattttaagtatgaaacgaactg 616

                                                                       
Query: 241 ttgaatttctatttttctaaaggcctttgggcagtttgtgttattcatgaacactaaaat 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 615 ttgaatttctatttttctaaaggcctttgggcagtctgtgttattcatgaacactaaaat 556

                                                                       
Query: 301 aataatggcaacgtatgagttaggttgacaagtattcttatatctcttgtgagatctaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aataatggcaacgtatgagttaggttgacaagtattcttatatctcttgtgagatctaag 496

                                                                       
Query: 361 agatatctagagaccaacaataaactaagtgttatgggatgattgagtgtcttagaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agatatctagagaccaacaataaactaagtgttatgggatgattgagtgtcttagaagaa 436

                                                                       
Query: 421 atagccaggtttccccactttagcgtgggttgctctcagatttcttgggaaactgcgaga 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 435 atagccaggtttccccactttagcatgggttgctctcagatttcttgggaaactgcgaga 376

                                                                       
Query: 481 aagctgctggcctttgctgcatcaagcttggcctttgacggattcagcagagctttatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagctgctggcctttgctgcatcaagcttggcctttgacggattcagcagagctttatat 316

                                                                       
Query: 541 tctgctgattgaccaatgcttgttgcgaagctaagctttaaaaccaaaagccttctaact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tctgctgattgaccaatgcttgttgcgaagctaagctttaaaaccaaaagccttctaact 256

                                                                  
Query: 601 acaactctgtctctaccaaattactttctgcctagaagtgattgttgcttgaaga 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acaactctgtctctaccaaattactttctgcctagaagtgattgttgcttgaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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