Query= MSMg01no514_l12.b1 MSMg01no514_l12.b1 CHROMAT_FILE:
MSMg01no514_l12.b1 PHD_FILE: MSMg01no514_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:43 2005
(692 letters)
>mm_chr14_85083496_85084587
Length = 1092
Score = 1309 bits (677), Expect = 0.0
Identities = 686/689 (99%)
Strand = Plus / Minus
Query: 4 ggaattcattagaattactttcttcactttgtggtatgatctttatcagcactccctcca 63
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 ggaattcattagaaacactttcttcactttgtggtatgatctttatcagcactccctcca 833
Query: 64 tatgcacagggaagtctatcaatatcttctgctccagggaaggctctgtttgccagaaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tatgcacagggaagtctatcaatatcttctgctccagggaaggctctgtttgccagaaac 773
Query: 124 aactctggactcagcagctggcaagatgactttttggctacagacagtgacaggccaact 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aactctggactcagcagctggcaagatgactttttggctacagacagtgacaggccaact 713
Query: 184 ggtcctcgatgcatgggcttctgtgtgcatcatcacgcccaaatacttattaactgccag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ggtcctcgatgcatgggcttctgtgtgcatcatcacgcccaaatacttattaactgccag 653
Query: 244 tttgctcaggcacagcaaacattgagaaacaggccagctagaacttccgcagtttggttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tttgctcaggcacagcaaacattgagaaacaggccagctagaacttccgcagtttggttg 593
Query: 304 cacagcaaggtcagtaccaaccttaattaggcagacaccacacgatcatttgcaaagatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cacagcaaggtcagtaccaaccttaattaggcagacaccacacgatcatttgcaaagatg 533
Query: 364 agctgaatgctgaaaataattttactataatttagcaagcaccaagactatgtaatctca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agctgaatgctgaaaataattttactataatttagcaagcaccaagactatgtaatctca 473
Query: 424 gggatatcattactgtgtagttatcaaaattgtcataagaaagtttatttccaagtagaa 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gggatatcattattgtgtagttatcaaaattgtcataagaaagtttatttccaagtagaa 413
Query: 484 aatcaccactaattttattctactctcctgttttcaatgaataatcaaaataaaatttga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aatcaccactaattttattctactctcctgttttcaatgaataatcaaaataaaatttga 353
Query: 544 agtttcaaataaataagatgaagatgagcaagaaagtggaacagaaaaagataaagcaat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agtttcaaataaataagatgaagatgagcaagaaagtggaacagaaaaagataaagcaat 293
Query: 604 gtttatgggaatatataagagaaaatattgaagataaaaataaagagtgtggtattaaag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gtttatgggaatatataagagaaaatattgaagataaaaataaagagtgtggtattaaag 233
Query: 664 ggaggacttgataatggaaaaagtctaag 692
|||||||||||||||||||||||||||||
Sbjct: 232 ggaggacttgataatggaaaaagtctaag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_l12.g1 MSMg01no514_l12.g1 CHROMAT_FILE:
MSMg01no514_l12.g1 PHD_FILE: MSMg01no514_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:43 2005
(593 letters)
>mm_chr14_84942461_84943453
Length = 993
Score = 1100 bits (569), Expect = 0.0
Identities = 585/593 (98%), Gaps = 6/593 (1%)
Strand = Plus / Plus
Query: 1 tctgcactgtcttctttgacaattggcaggggcaatgtctttctctaactgacagtctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcactgtcttctttgacaattggcaggggcaatgtctttctctaactgacagtctta 260
Query: 61 tctctggctctaatcaggcccaatggtccatggaatgaaaaagctgttgcttttcctgtt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tctctggctctaatcaggcccaatggtccatggaatgaaaaagctgttgcttttcctgct 320
Query: 121 tctaatcctactaaaggagtttagagcacataccctaaggcagaagagaatcccccaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tctaatcctactaaaggagtttagagcacataccctaaggcagaagagaattccccaact 380
Query: 181 ctcaaaggtgaagaatgtaatccacattgggaaccgtctcaaaggtgtaatcttctaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaaaggtgaagaatgtaatccacattgggaaccgtctcaaaggtgtaatcttctaggc 440
Query: 241 cagttgctgtgacccagttttatcctcaggactaaagtcacttgtgtgtgtgtgtgtgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagttgctgtgacccagttttatcctcaggactaaagtcacttgtgtgtgtgtgtgtgtg 500
Query: 301 tgtgtgtgtgtgtgtgtgtgtgtgtgttgaatctgactctggcatcatcaggagttggta 360
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtgtgtgtgtgtgtgtgtgt----tgaatctgactctggcatcatcaggagttggta 556
Query: 361 tcatcaggcaatgatgtgaaatggagatcaggcaaaaacattgttcaagcagatgttagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcatcaggcaatgatgtgaaatggagatcaggcaaaaacattgttcaagcagatgttagt 616
Query: 421 gatcatgtgtaagcctgatgccacagaatagatgggtttattgatcttctaggcatcttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gatcatgtgtaagcctgatgccacagaatagatgggtttattgatcttctaggcatcttc 676
Query: 481 caaccacaagtactgattttagttctttcaaagtaatactcaaaatgccaaaaaaaaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 caaccacaagtactgattttagttctttcaaagtaatactcaaaatgccaaaaaaaaa-- 734
Query: 541 ttatgttagattgacattctaaatgaggttaggggaaggtgagtgcaaacagt 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttatgttagattgacattctaaatgaggttaggggaaggtgagtgcaaacagt 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
