BAC Information

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BAC

Clone NameMSMg01-515O06
Chromosome14 (Build37)
Map Location 82,731,860 - 82,732,534
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515O06.T7 (MSMg01no515_o06.b1)MSMg01-515O06.TJ (MSMg01no515_o06.g1)
ACCAG588019AG588020
length779778
length of high quality
(start - end)
706 (34 - 739)669 (74 - 742)
definitionCHROMAT_FILE: MSMg01no515_o06.b1 PHD_FILE: MSMg01no515_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:24 2005CHROMAT_FILE: MSMg01no515_o06.g1 PHD_FILE: MSMg01no515_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGA
ATTCAAGGCCCATTCCTAAACATGATAAAAGCAATCTACAGCAAACCAGT
AGCCAGCATCAAAGTAAATGGTGAGAAGCTTAATGCAATCCCACTAAAAT
CAGGGACTAGAGAAGGCTGTCCATTCTCTCCTTACCTATTCAACATTGTA
CTTGAAGTCATAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGAGGAT
ACTAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGTATATATATACGTGACCCTAAAAATTCCACCAGAGAACTCCTAAGCC
TGATAAACAGCTTCAGTGACGTAGCTGGATATAAAATTAACTCAAACAAG
TCAATGGCCTTTCTCTACACAAAGGACAAACAGGCTGAGAAAGAAATTAG
GGAAACAACACCCTTCTAAATAGCCACAAATAATATAAAATACCTAGGCA
TGACTCTAACTAAGGAAGTGAAACATCTGTATGACAAGAACTTCATGTCT
CTGAAGAAAGAAATTAAAGAAGATCTCAGATGGAAAGATCTCCCATGCTC
ATGGATTGGCAGGATCACTATAGTAAAAATGGCTATCTTGCCAAAAGTAA
TCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAGTTCTTCAAC
GAATTAGAAAGGGCAATCGGCAGATTCATCTGGAATATCAAAAAACCTAG
GATAGCAAAAACTCTTCTTCAGGATAAAA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTTGTTGCACTATGTGGAGGGTATTA
TGTAATGCAGGAGTTTTTATAATGTCTCCAGACAATGTGTATCATTTAGC
TGTCAGCTAAATATTGATTTCAACCAAAATGAATGTTAGCTGTGATTTTT
CAAGGACACAAAGGGAAAAATGTAAAAGATGAAAATATGGAAACTTGCTC
ATTGTGGAACAGTTCTAAAACTCCACTGTGCTATCCCAGAACTTAATTAT
ATAGAATTGACTGAATTTCGGATGTGGCACTTTTATTGAGTATACAGAGT
CTATTTGAGATATACATGTGTTAAAAAGAACTATATCAGCCAGTTCCTCA
GAAAGACACATTGATAGAATATTATTAAATCAAAGTGGTTTGCTGTTCTT
CAGTTGAACAGATTTATACCTACAACTGAATATTATTTTACATTTTGTAC
AATTCCTAAAATCAAGGAAAAAGCCCTTTATTAAAGTTTTTATTTAAGTA
AATTTAATGTTAGTCTACTCACACGTTTATTTTATACCACAACATCCACA
TGATAAATTATTTAACACTATAGCATTGCCAATACTTTTGAGAAATTTTT
CCTACATTGAAATTATCACGCCACATTAAGATAAACAACTAGCATTCAGT
AAATTCATTCTTTTGAAGAAGTCTATAATGAAATACTATTGTGTGAGAGC
ATAACTTAGACAAATTTAATTATTCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_o06.g1 MSMg01no515_o06.g1 CHROMAT_FILE:
MSMg01no515_o06.g1 PHD_FILE: MSMg01no515_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:24 2005
         (669 letters)



>mm_chr14_82731660_82732734
          Length = 1075

 Score = 1224 bits (633), Expect = 0.0
 Identities = 662/675 (98%), Gaps = 6/675 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttgttgcactatgtggagggtattatgtaatgcaggagtttttataatgtctccagac 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttattgcactatgtggagggtattatgtaatgcaggagtttttataatgtctccagac 260

                                                                       
Query: 61  aatgtgtatcatttagctgtcagctaaatattgatttcaaccaaaatgaatgttagctgt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 aatgtgtatcatttagctgtcagctaaatattgatttaaaccaaaatgaatgttagctgt 320

                                                                       
Query: 121 gatttttcaaggacacaaagggaaaaatgtaaaagatgaaaatatggaaacttgctcatt 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gatttttcaaggacacaaagggaaaaatgtaaaagattaaaatatggaaacttgctcatt 380

                                                                       
Query: 181 gtggaacagttctaaaactccactgtgctatcccagaacttaattatatagaattgactg 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gtggaacagttctaaaactccactgtgctatcccagcacttaattatatagaattgactg 440

                                                                       
Query: 241 aatttcggatgtggcacttttattgagtatacagagtctatttgagatatacatgtgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttcggatgtggcacttttattgagtatacagagtctatttgagatatacatgtgtta 500

                                                                       
Query: 301 aaaagaactatatcagccagttcctcagaaagacacattgatagaatattattaaatcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagaactatatcagccagttcctcagaaagacacattgatagaatattattaaatcaa 560

                                                                       
Query: 361 agtggtttgctgttcttcagttgaacagatttatacctacaactgaatattattttacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtggtttgctgttcttcagttgaacagatttatacctacaactgaatattattttacat 620

                                                                       
Query: 421 tttgtacaattcctaaaatcaaggaaaaagccctttattaaagtt------tttatttaa 474
           |||||||||||||||||||||||||||||||||||||||||| ||      |||||||||
Sbjct: 621 tttgtacaattcctaaaatcaaggaaaaagccctttattaaatttaaaatttttatttaa 680

                                                                       
Query: 475 gtaaatttaatgttagtctactcacacgtttattttataccacaacatccacatgataaa 534
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 gtaaatttaatgttagtctactcacaagtttattttataccacaacatccacatgataaa 740

                                                                       
Query: 535 ttatttaacactatagcattgccaatacttttgagaaatttttcctacattgaaattatc 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttatttaacactatagcattgccaatacttttgagaaatttttcctacattgaaattatc 800

                                                                       
Query: 595 acgccacattaagataaacaactagcattcagtaaattcattcttttgaagaagtctata 654
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgccacattaagataaacaactagcattcagtaaattcattcttttgaagaagtctata 860

                          
Query: 655 atgaaatactattgt 669
           |||||||||||||||
Sbjct: 861 atgaaatactattgt 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1075
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1065
Effective search space:   701835
Effective search space used:   701835
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)