BAC Information

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BAC

Clone NameMSMg01-516M24
Chromosome14 (Build37)
Map Location 110,146,294 - 110,146,573
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk1, LOC640892
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516M24.T7 (MSMg01no516_m24.b1)MSMg01-516M24.TJ (MSMg01no516_m24.g1)
ACCAG588719AG588720
length771762
length of high quality
(start - end)		581 (53 - 633)629 (82 - 710)
definitionCHROMAT_FILE: MSMg01no516_m24.b1 PHD_FILE: MSMg01no516_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:41 2005CHROMAT_FILE: MSMg01no516_m24.g1 PHD_FILE: MSMg01no516_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGC
AAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCC
ACTAAAATCAGGGACTAGACAAGGCTACCCACTTTCTCCCTACCTTTTCA
ACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATC
AAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGA
TGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCC
TAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCA
AACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGA
AATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATC
TTGGCGTGACTCTAACTAAGGAGGTGAAAGATCTGTATGATAAAAACTTC
AAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCT
CCCATGCTCATGGATTGGCAGGATTAACATTGTAAAAATGCCTATCTTGC
CAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAACTTCCAACTCAA
TTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCNT
AAAGTTTACTACAGAGCAATT

NTTTTCCCGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTGTTATGACTGAGTA
ATTTCTGTTTTGTTCATACTCCAACATAATTTCACGAATTTCATCTATAT
CATTGATAGGAAAAATCCTTAAGATCATATAATATCAAATATCCTAGAAG
GTACATATTTAAATATAGGCTCACAAAAGGATCATAGACTTGAATGCATA
AATTTGGAAAATATTGGGTTCTATTTATTTTATGCCATATAGAATATAAA
TATTCACTTAATGTGTTTTAAAAACATTTTCTCTTACTCTTTATTCATTT
TATTATAAAAAATATTTATCTTTCCAAAGTACATTTCATTCTCTGTTAGA
AGTTAGAATTTACAGGTGCTAAAAAAAAAATGTCTCAGAGGTTACAAGCA
CTTTGGCTCTCAAAGAGGACCCTGATTCAATTCCCAGAACCCACATCGTG
TTCCATTGCTATTTCTAATTCTAGTTCCAGGAGACTGGATACTTTCCTTC
AACCTCCACATTCACCAAGTACACACATGTTACATATACATACACCCTGG
TAAAATAACGATATTTAAAATAAAATAAGTAAATCTAACTTAAAAATATT
TTAAAACTAAAATAAAATTAGAATTTACCAACAATCATTTTTCAATGAAT
ATATTGATTTTAAAGATAAAAGTAAGTTACTTGTTAAAGGAAGATTCAGT
TTTATTGTAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_m24.g1 MSMg01no516_m24.g1 CHROMAT_FILE:
MSMg01no516_m24.g1 PHD_FILE: MSMg01no516_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:41 2005
         (629 letters)



>mm_chr14_110146112_110147137
          Length = 1026

 Score =  484 bits (250), Expect = e-140
 Identities = 274/284 (96%), Gaps = 5/284 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   cttgttatgactgagtaatttctgttttgttcatactccaacataatttcacgaatttca 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 462 cttgttatgactgagtaatttctgttttgttcatactccaacataatttcacgaattcca 403

                                                                       
Query: 63  tctatatcattgatagg-aaaaatccttaagatcatataatatcaaatatcctagaaggt 121
           ||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 402 tctatatcattgataggaaaaaatcctcaaggtcatataatatcaaatatcctagaaggt 343

                                                                       
Query: 122 acatatttaaatataggctcacaaaaggatcatagacttgaatgcataaatttggaaaat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acatatttaaatataggctcacaaaaggatcatagacttgaatgcataaatttggaaaat 283

                                                                       
Query: 182 attgggttctatttattttatgccatatagaatataaatattcacttaatgtgttttaaa 241
           |||||||||    |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 282 attgggttc----tattttatgccatatagattataaatattcacttaatgtgttttaaa 227

                                                       
Query: 242 aacattttctcttactctttattcattttattataaaaaatatt 285
           |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 226 aacattttctgttactctttattcattttattataaaaaatatt 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1026
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1016
Effective search space:   628904
Effective search space used:   628904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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