Query= MSMg01no517_d17.b1 MSMg01no517_d17.b1 CHROMAT_FILE:
MSMg01no517_d17.b1 PHD_FILE: MSMg01no517_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:14 2005
(679 letters)
>mm_chr14_109057299_109058377
Length = 1079
Score = 1261 bits (652), Expect = 0.0
Identities = 661/664 (99%)
Strand = Plus / Minus
Query: 16 ctgtgttgcctgcagtgggtctgaacgaagaagagcccgtcaatagtcacttatggatga 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 ctgtgttgcctgcagtgggtctgaacgaagaagagcccgtcaatagtcacttatggatga 1020
Query: 76 gagatggatttatgcaattccctgtcttttggaggaactattggttatttgtggattctt 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 gagatggatttatgcaattccctgtcttttggaggaactattggttatttgtggattctt 960
Query: 136 ggggaggaagagatatccttttcgggattgatctcaaggtttagcagagaacccattgtg 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 ggggaggaagagatatccttttcgggattgatctcaaggtttagcagagaacccattgtg 900
Query: 196 tcccagtggatagtgccataatgctgctcattcgccttttccattttaaagtcagtgagt 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 tcccagtggatagtgccataatgctgctcattcgccttttccattttaaagtcagtgagt 840
Query: 256 cacaaaagaaagccaaaacaatatagatggagaaaagtgacttatcattaccatattaat 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 cacaaaagaaagccaaaacaatatagatggagaaaagtgacttatcattaccatattaat 780
Query: 316 atggtggctcaggatgggaagaaggtgagagaggaagatgaatgtgagtaatcatcatgt 375
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 779 atggtggctcaggatgggaagaaggtgagagaggaagatggatgtgagtaatcatcatgt 720
Query: 376 atcctatggaattatgtgtatgatcatctaagaataaatttatttaactaaaaggaacac 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 atcctatggaattatgtgtatgatcatctaagaataaatttatttaactaaaaggaacac 660
Query: 436 aaaaactgtttaacttgttttttgtttgggaggaggatatgtttgattttgtttcttaaa 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aaaaactgtttaacttgttttttgtttgggaggaggatatgtttgattttgtttcttaaa 600
Query: 496 tgattttataggaatatgtatctgtaaaagaatctatctgggagcgtttactttaacaat 555
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 599 tgattttataggaatacgtatctgtaaaagaatctatctgggagcatttactttaacaat 540
Query: 556 agctgtctctaagagaagactgttttctgtaattttctgctgcttgccctggatttgcag 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agctgtctctaagagaagactgttttctgtaattttctgctgcttgccctggatttgcag 480
Query: 616 taccgattgcaattcccacacttccttccttgatcctttgctgagctctagtgagtaaca 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 taccgattgcaattcccacacttccttccttgatcctttgctgagctctagtgagtaaca 420
Query: 676 gcat 679
||||
Sbjct: 419 gcat 416
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_d17.g1 MSMg01no517_d17.g1 CHROMAT_FILE:
MSMg01no517_d17.g1 PHD_FILE: MSMg01no517_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:14 2005
(617 letters)
>mm_chr14_108892158_108893174
Length = 1017
Score = 1083 bits (560), Expect = 0.0
Identities = 604/619 (97%), Gaps = 4/619 (0%)
Strand = Plus / Plus
Query: 1 cagtaattcttaatcagttgggaataattttcaaaatgcaatgtgtatctgaaaaaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 cagtaattcttaatcagttgggaataattttcaaaatgcaatgtgtatctgaaaaaa-tt 259
Query: 61 gaattctgttttttcacaaaagttaaccatagctttaagagtttttt-aatcttgacata 119
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 260 gaattctgttttttcacaaaagttaaccatagctttaagagtttttttaatcttgacata 319
Query: 120 aataaggaggtaagggatataggttaagtgtgcatatttatctgacaatctggccctact 179
|||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 320 aataaggaggtaagggatttaggttaagtgtgcacatttatctgacaatctgtccctact 379
Query: 180 tgatcctttgtatgtttgttttgtaatttgaattggctctagttttctctaagactcatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgatcctttgtatgtttgttttgtaatttgaattggctctagttttctctaagactcatg 439
Query: 240 gaaagaacaacatggtaaaagttattgctctacaaagagagtgcatatatttcacaagta 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 gaaagaacaacatggtaaaagttattgctctacaaagagagtgtatatatttcacaagta 499
Query: 300 ccaactatttatattctatgaagtggacaaattggatagatgctgttgtacagcctaata 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 500 ccaactatttatattctatgaagtggacaaattggatagatgctgttgtagagcctaata 559
Query: 360 acaaataaagcagagaagaaaaatgactaatactacagtggagtttgccagaaattgaat 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 560 acaaataaagcagagaagaaaaattactaatactacagtggagtttgccagaaattgaat 619
Query: 420 ttgcaagtatacctgtttggaatattggcttttatatttaaaaagttgcaaaccatttca 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 620 ttgcaagtatacctgtttggaatattgacttttatatttaaaaagttgcaaaccatttca 679
Query: 480 tccattctctagatcttgacattcatattaaaaatgggatactagttaattatagttatg 539
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 680 tccattctctagatcttgacattcttattcaaaatgggatactagttaattatagttatg 739
Query: 540 agata-gagacttaaaaacataaataaatctttatacataatagatgcctaanatattta 598
||||| | |||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 740 agatatg-gacttaaaaacataaataaatcttcatacataatagatgcctaaaatattta 798
Query: 599 aaataaatttgcattggaa 617
|||||||||||||||||||
Sbjct: 799 aaataaatttgcattggaa 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
