BAC Information

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BAC

Clone NameMSMg01-517E17
Chromosome14 (Build37)
Map Location 51,929,901 - 51,930,560
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187
Downstream geneEG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517E17.T7 (MSMg01no517_e17.b1)MSMg01-517E17.TJ (MSMg01no517_e17.g1)
ACCAG589080AG589081
length745962
length of high quality
(start - end)		664 (38 - 701)---
definitionCHROMAT_FILE: MSMg01no517_e17.b1 PHD_FILE: MSMg01no517_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:19 2005CHROMAT_FILE: MSMg01no517_e17.g1 PHD_FILE: MSMg01no517_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:19 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAG
CATCACTAAAAGTAAAAGGAGGGAAATAAGAGTGTTCGCGGCCACTGTGC
TGCTGTGGGGTGTGCTGCTGCTTTACGGAGCCTACAGAGCTGGCTGAATG
CCTCACATCCTTCCTCCTGTGAAATCAACCAGGTTTACAGTGCAACTGTG
TGACCCACGTGTTACCACTGGACAAGGGGCAAGAGATGTACAAATGAACA
TGCCAGGATAGCAGTGGAATCCAGTTCCCCTGGGATAAGAGAATAAAGCA
AAGAGCTTAGGTGAATTGGGATTTGAGATTATGACTCATAGACTCCTTAG
GCCTTAGAGTATGGCTGGATACAAGACACAAGTCCTGAAATGATAATTTT
TTCACTTCCTCACTTTTTTCACTGTTTTATAGAAAAAAATTTTTATTAGT
TTCATTTTCTGATGGACTTTGCCAGAACTTTGTAACTGAACATTTTACAG
ATGAAGACAAACAAGTGGATTCTGTGAAGATCCACCTCCTACATGGGTAG
AGGGGTATTTATGCCAATCAGCGAGGAGTTAAAGCGACCTGTGACAAAGA
ATTCATCTTGCATCCAGAAAATATGTTTTCTTCATGCTAATCTGTTGCTG
GCATGGTCACAGAGGTTAGAAACCCAGAGCTTATGTCTTTCCACCTACAT
CANGAAAGGTCAGCCAGCAGGACAGGCTGTCCCTAGGCTTATAAA

AACGGTGTAGAGCNGGAAAGANGACATTTTCAAAAAAGGGGGGGGTGATG
NAGTAGGGATTTCCCCCAAAAAAGAGGGGACTGCGCGCGTCGCGTTAACG
ACGAGCGGGCACTGCGGAGAGACCCTGGTCGGCTACCGCAACTTAGAGCG
GCCTGTGCATCGACATCTCCTCCGTTTCGCCGAGCATGGCGGTAAGGAGG
CGAGAGAGGGCCCGGCACCGGATCTGCCCTGTCCGCAAGCAGTTGGCGCA
GACCTGGAGACGGGTGAATGGGCGGGCTGTATGCGCATGATTTTCTCCAT
TAGCGCATCTTGCGTAGGGAATTGTCATGAGCGGCATGATGAGTGAGACT
ACGCCATGACAAATCGAGGCGTCTGATGTTTTTGTTATGGTAATAGCGGT
GCTGTGGAGTCCGCTCCGAACTGCCCGTTTGAGCGGCGCCCGTTGTATAT
GGCAGAGAGCTTGCTCCGCCCGGCTTCCTTCTATCCTGTATTATTCTGCC
CCCCCCCTCCCCCGGACAACATACAGTGGTGGTCATGATGATTTTATTCG
AATGCGTGTTGCGTTCCCGCCCCCGCTCTGTGATAGGTGCCCATTGCGAT
TTACTCCTGTATCGTGTTTCAACGATTGAAGGGGCCAGTAACCTCAATTT
TTTTTCTGTTGCACAGTCCCAGCGCCATAAATTTTGATTAATGCNTGTGC
GGCGCCCTTAAATACCTGAGGTGGCGTTATTTTCATAGATATAACGACTC
TCCAAGAATGTATTCTACCTACCTGTTTTCGGCGTTGTCACGCGCTTTAA
CATTGTCACGACCGTATGTACATTTCTGTTGGACACCACGTACTGTAAGT
GGATGTGGCTGTAAAGATAGTGCTCGAGTACAATGTGTTCGCTCGTCTCG
TGATAACATATTAATGTCTAGTATACTGCGGTGGCGCGAGTGTCATATAT
ATTATTCCCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_e17.b1 MSMg01no517_e17.b1 CHROMAT_FILE:
MSMg01no517_e17.b1 PHD_FILE: MSMg01no517_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:19 2005
         (664 letters)



>mm_chr14_51929697_51930760
          Length = 1064

 Score = 1261 bits (652), Expect = 0.0
 Identities = 658/660 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagcatcactaaaagtaaaaggagggaaataagagtgttcgcggccactgtgct 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gaattctagcaacactaaaagtaaaaggagggaaataagagtgttcgcggccactgtgct 805

                                                                       
Query: 65  gctgtggggtgtgctgctgctttacggagcctacagagctggctgaatgcctcacatcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gctgtggggtgtgctgctgctttacggagcctacagagctggctgaatgcctcacatcct 745

                                                                       
Query: 125 tcctcctgtgaaatcaaccaggtttacagtgcaactgtgtgacccacgtgttaccactgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcctcctgtgaaatcaaccaggtttacagtgcaactgtgtgacccacgtgttaccactgg 685

                                                                       
Query: 185 acaaggggcaagagatgtacaaatgaacatgccaggatagcagtggaatccagttcccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acaaggggcaagagatgtacaaatgaacatgccaggatagcagtggaatccagttcccct 625

                                                                       
Query: 245 gggataagagaataaagcaaagagcttaggtgaattgggatttgagattatgactcatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gggataagagaataaagcaaagagcttaggtgaattgggatttgagattatgactcatag 565

                                                                       
Query: 305 actccttaggccttagagtatggctggatacaagacacaagtcctgaaatgataattttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actccttaggccttagagtatggctggatacaagacacaagtcctgaaatgataattttt 505

                                                                       
Query: 365 tcacttcctcacttttttcactgttttatagaaaaaaatttttattagtttcattttctg 424
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 504 tcacttcctcacttttttcactgttttatagaaaaaaaattttattagtttcattttctg 445

                                                                       
Query: 425 atggactttgccagaactttgtaactgaacattttacagatgaagacaaacaagtggatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atggactttgccagaactttgtaactgaacattttacagatgaagacaaacaagtggatt 385

                                                                       
Query: 485 ctgtgaagatccacctcctacatgggtagaggggtatttatgccaatcagcgaggagtta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgtgaagatccacctcctacatgggtagaggggtatttatgccaatcagcgaggagtta 325

                                                                       
Query: 545 aagcgacctgtgacaaagaattcatcttgcatccagaaaatatgttttcttcatgctaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagcgacctgtgacaaagaattcatcttgcatccagaaaatatgttttcttcatgctaat 265

                                                                       
Query: 605 ctgttgctggcatggtcacagaggttagaaacccagagcttatgtctttccacctacatc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgttgctggcatggtcacagaggttagaaacccagagcttatgtctttccacctacatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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