BAC Information

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BAC

Clone NameMSMg01-517M21
Chromosome14 (Build37)
Map Location 98,184,572 - 98,308,889
singlet/doubletdoublet
Overlap geneDach1
Upstream geneLOC668654, EG668659
Downstream geneLOC635593, LOC619716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517M21.T7 (MSMg01no517_m21.b1)MSMg01-517M21.TJ (MSMg01no517_m21.g1)
ACCAG589465AG589466
length768780
length of high quality
(start - end)		578 (36 - 613)484 (65 - 548)
definitionCHROMAT_FILE: MSMg01no517_m21.b1 PHD_FILE: MSMg01no517_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:01 2005CHROMAT_FILE: MSMg01no517_m21.g1 PHD_FILE: MSMg01no517_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,184,572 - 98,185,146)(98,308,406 - 98,308,889)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTA
TGACACTATTTTTGTGAGAGACTGTATGTGCTACTTACCTTAAAAGGGTT
TGATCATTGATAAGAAAAATGAAGCAATTGTTAATGCATAAACAAATAAT
GTGAAGAGAATCACAAATGTGCTGGTTTTATTTTCATTTATTGGAAAATG
CATGTACTTCCCAATTTAAAATTCTTATCCTTTTGTCAAATAATCTTTTG
CTATTATCTCGAAGTAAAAAGAAAAGGTTACTCTAACTCCATGGTTACTA
CCTGGTGTGAAAGTGTCTTAGTAAATACTTTAGTCATTTCCACTGATGTC
AGCTGCAGCACGAAGGATGTGTACATCTTTTGATCCTGCTCTTGTAAAAG
TCCCTATTCCAACAAAATTAGATCTTCATTGGGACATTACGATTTTTAGC
GTGGGTCGTTACAACAGTTAGCACAGTACTTTCTGAAGCAGAGAGGCCTT
ACCTGTGAACCTTTTAAAATAATAAATAAATGAGGATTGGTTCATATTTT
CTCTACTAATTTTTCATATTAAAAGCTTAAGCAACACATACAATTCTAAG
TGTACAGTTTTAAGAGGAAAACTGACACTTTCTGCGTATTTTTACAATAG
TGTATTCATTCCATTAAAATGTTTACTTTCTGTATCTTAAAATGCAGCCC
AAATGAAAAATAATAACACACAGAGAAAAATCTAAGTTACTACNAAAATC
ACTTAACTCCGAGATTTN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACCTTTACCTTTGTATTAGCATAAAGAACAATACT
TATTGTTCTGCATCAATGTATGCAGCCTTCTCTCTGCATTTATTTTTAAA
CCATTACTTTATTAGTCTGACCTTCTTTACAGTGAAAGAGTACTCCTCTT
AAATTTTCATTTATTATCATGGTGAGTTTTATAAAGATGGAACATTGCGA
AAGATTGTGTTTTATTGATTGGTGGAGTTGGTGTAGGACTATAAAGCAGT
GTGTCAAAGCATTAAATAATATTCTTTTCTGTTCTACCTCGGGCCAGTTT
AGAGGTTAAAAGGTATCAAGCAAATGAAATTATAAATCCAGTTTACATAG
TTTCCCCAAAGATATTGAACTTCTTTCCTATTATGTATAAATAAAACTCA
TTATCTATTTTGTTTCAGTAATAATTACAAGGTCCTCCTCTAAGCTATTC
TTTACTGTCTCCATTATTCTCTATCCTATAGAATACTCTGAAAAGGCAAG
CATATAAATATGATAAAAGAATTAAGCTGTTGAATAAATTAATTTATTGT
GGAACATGGTATCAAATCTTACTTGCTCGATGGATTTTGCTTTNATGAAN
TCTTCAAAGAACATACATCACGTTCTAAAGATTGAATTATACATTAAGTG
AATGACTGGATATGTGGGCTCATTTATAGGAAGTTCGATGGATAATTAGC
TTTTAATCATAAATTGCATAAAGATTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_m21.b1 MSMg01no517_m21.b1 CHROMAT_FILE:
MSMg01no517_m21.b1 PHD_FILE: MSMg01no517_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:01 2005
         (578 letters)



>mm_chr14_98184369_98185346
          Length = 978

 Score = 1112 bits (575), Expect = 0.0
 Identities = 575/575 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatttatgacactatttttgtgagagactgtatgtgctacttaccttaaaaggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatttatgacactatttttgtgagagactgtatgtgctacttaccttaaaaggg 263

                                                                       
Query: 64  tttgatcattgataagaaaaatgaagcaattgttaatgcataaacaaataatgtgaagag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttgatcattgataagaaaaatgaagcaattgttaatgcataaacaaataatgtgaagag 323

                                                                       
Query: 124 aatcacaaatgtgctggttttattttcatttattggaaaatgcatgtacttcccaattta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatcacaaatgtgctggttttattttcatttattggaaaatgcatgtacttcccaattta 383

                                                                       
Query: 184 aaattcttatccttttgtcaaataatcttttgctattatctcgaagtaaaaagaaaaggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaattcttatccttttgtcaaataatcttttgctattatctcgaagtaaaaagaaaaggt 443

                                                                       
Query: 244 tactctaactccatggttactacctggtgtgaaagtgtcttagtaaatactttagtcatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tactctaactccatggttactacctggtgtgaaagtgtcttagtaaatactttagtcatt 503

                                                                       
Query: 304 tccactgatgtcagctgcagcacgaaggatgtgtacatcttttgatcctgctcttgtaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccactgatgtcagctgcagcacgaaggatgtgtacatcttttgatcctgctcttgtaaa 563

                                                                       
Query: 364 agtccctattccaacaaaattagatcttcattgggacattacgatttttagcgtgggtcg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtccctattccaacaaaattagatcttcattgggacattacgatttttagcgtgggtcg 623

                                                                       
Query: 424 ttacaacagttagcacagtactttctgaagcagagaggccttacctgtgaaccttttaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttacaacagttagcacagtactttctgaagcagagaggccttacctgtgaaccttttaaa 683

                                                                       
Query: 484 ataataaataaatgaggattggttcatattttctctactaatttttcatattaaaagctt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ataataaataaatgaggattggttcatattttctctactaatttttcatattaaaagctt 743

                                              
Query: 544 aagcaacacatacaattctaagtgtacagttttaa 578
           |||||||||||||||||||||||||||||||||||
Sbjct: 744 aagcaacacatacaattctaagtgtacagttttaa 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no517_m21.g1 MSMg01no517_m21.g1 CHROMAT_FILE:
MSMg01no517_m21.g1 PHD_FILE: MSMg01no517_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:01 2005
         (484 letters)



>mm_chr14_98308206_98309089
          Length = 884

 Score =  936 bits (484), Expect = 0.0
 Identities = 484/484 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacctttacctttgtattagcataaagaacaatacttattgttctgcatcaatgtatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cacctttacctttgtattagcataaagaacaatacttattgttctgcatcaatgtatgca 625

                                                                       
Query: 61  gccttctctctgcatttatttttaaaccattactttattagtctgaccttctttacagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gccttctctctgcatttatttttaaaccattactttattagtctgaccttctttacagtg 565

                                                                       
Query: 121 aaagagtactcctcttaaattttcatttattatcatggtgagttttataaagatggaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaagagtactcctcttaaattttcatttattatcatggtgagttttataaagatggaaca 505

                                                                       
Query: 181 ttgcgaaagattgtgttttattgattggtggagttggtgtaggactataaagcagtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgcgaaagattgtgttttattgattggtggagttggtgtaggactataaagcagtgtgt 445

                                                                       
Query: 241 caaagcattaaataatattcttttctgttctacctcgggccagtttagaggttaaaaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaagcattaaataatattcttttctgttctacctcgggccagtttagaggttaaaaggt 385

                                                                       
Query: 301 atcaagcaaatgaaattataaatccagtttacatagtttccccaaagatattgaacttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcaagcaaatgaaattataaatccagtttacatagtttccccaaagatattgaacttct 325

                                                                       
Query: 361 ttcctattatgtataaataaaactcattatctattttgtttcagtaataattacaaggtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcctattatgtataaataaaactcattatctattttgtttcagtaataattacaaggtc 265

                                                                       
Query: 421 ctcctctaagctattctttactgtctccattattctctatcctatagaatactctgaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcctctaagctattctttactgtctccattattctctatcctatagaatactctgaaaa 205

               
Query: 481 ggca 484
           ||||
Sbjct: 204 ggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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