BAC Information

Click to search

BAC

Clone NameMSMg01-517P23
Chromosome14 (Build37)
Map Location 96,785,893 - 96,786,386
singlet/doubletsinglet
Overlap geneKlhl1
Upstream geneLOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517P23.T7 (MSMg01no517_p23.b1)MSMg01-517P23.TJ (MSMg01no517_p23.g1)
ACCAG589610AG589611
length810796
length of high quality
(start - end)
80 (37 - 116)494 (68 - 561)
definitionCHROMAT_FILE: MSMg01no517_p23.b1 PHD_FILE: MSMg01no517_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:16 2005CHROMAT_FILE: MSMg01no517_p23.g1 PHD_FILE: MSMg01no517_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGG
ATATTTAAACAGGAGTGAGTGGGTTGGTGAGCAGGGGGAGGGGGAAAGGG
ATAGGAGTTTTTTGGAGGGAAAAGCAAGAAAAAAGATAACATTTGAAATG
TAAATAAAGAAAATATCTAATTAAACAACAAAACAAACAGAAAGCAATGG
GAATGTTGCAGAAGAATTTCAACTTATTGCATTAAGGGCCCAGTAATGGA
GTCTCATAAGGGTCCCTCCAGAATAATCACCCATACAGAGCCAGTTCAAT
AAATGCCCCGTTTATCTTGTTCTTATTGTATCCTATTATCTCCTTTGTTC
TCCCTCTTTATTTTATTTTCTTCCACTTTAATTGTCCATTATCTAATAAA
TAGTTAAACCCCCCCACTTTTTCTAGTTCACATGGTTATACTTTAACCAC
CTCCCTTGTACACCATCTTTTCCACAAGTCTTATTAACCAATTCCATTAT
TTCAACCACTATATTTTCACCACATTTTATTTTCCCTCATTTATTTCTTC
TTTTACCGTTTCCCCCATTTTATTACACTTTTCTTACTTCTCGCACTTGT
ATCATCCTCTTCCCCTACAATTTATATATTACTTCATAAACTCAACATCT
CCTCTTTTCCTTTCCTATTTTCCACTTTACTTCTTTCCTTAAATTATCAT
ACATCTTCCTTATCCACCTTCATTATATCAACCACTTTATTTAATATACA
TACCCTTTTTGTCTTTTTCACCATCTCTCTATTATTTGAAACCAACATTT
CCTTTTTATA
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCACGAAGTCTCCTTCCCACAGTTATAGTTAA
AACATGCTTGCAACATGCTAAGAAATTGCTATTTGTATTATTCATGAAAA
GTAAAAGAAAGATTTCTGAAATTATTGATATGTAAATGTAATCTCTTCAG
AAGCTGCACAAGTATATCTTTTCAATATGGACAAATAAACGAGAACTACA
TAATATCTATATCAATTAACATAGAAGGAAATTTCACAGGTATCACACCT
AGGTTAAGCACTACAGGTAATAAATAGTTGATAAAGACAGACAATCACTT
CACTTCAGGGATGAGACCTCTGATAGATAATCTTAACCCAAGTGGTCAAG
CCCAAACATATTTACATGTGACCAATATTATATATACATGTATAATACAG
TAACCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACCAGTTATAATTAAAGAAGAAAATTAAGAAAAGGTATATATTAA
GAGAACTCAACTATCAGTGGTTTTAGGTTGGTTTTCAGAGTCAAAACAGA
CATTAATGAGTGAAACAGCTCTTTCAGGACNAATGTTTATGATTAAATTA
GGTTATATTATATCATGAAAGCTCAAACTATCCGTCACGATTATTTTATT
TTTTTTTATATATGCCAGGTGAGGAGGATTTGGCATGATAAAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_p23.g1 MSMg01no517_p23.g1 CHROMAT_FILE:
MSMg01no517_p23.g1 PHD_FILE: MSMg01no517_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:16 2005
         (494 letters)



>mm_chr14_96785800_96786693
          Length = 894

 Score =  955 bits (494), Expect = 0.0
 Identities = 494/494 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcacgaagtctccttcccacagttatagttaaaacatgcttgcaacatgctaagaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctcacgaagtctccttcccacagttatagttaaaacatgcttgcaacatgctaagaaatt 528

                                                                       
Query: 61  gctatttgtattattcatgaaaagtaaaagaaagatttctgaaattattgatatgtaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gctatttgtattattcatgaaaagtaaaagaaagatttctgaaattattgatatgtaaat 468

                                                                       
Query: 121 gtaatctcttcagaagctgcacaagtatatcttttcaatatggacaaataaacgagaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gtaatctcttcagaagctgcacaagtatatcttttcaatatggacaaataaacgagaact 408

                                                                       
Query: 181 acataatatctatatcaattaacatagaaggaaatttcacaggtatcacacctaggttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 acataatatctatatcaattaacatagaaggaaatttcacaggtatcacacctaggttaa 348

                                                                       
Query: 241 gcactacaggtaataaatagttgataaagacagacaatcacttcacttcagggatgagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcactacaggtaataaatagttgataaagacagacaatcacttcacttcagggatgagac 288

                                                                       
Query: 301 ctctgatagataatcttaacccaagtggtcaagcccaaacatatttacatgtgaccaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ctctgatagataatcttaacccaagtggtcaagcccaaacatatttacatgtgaccaata 228

                                                                       
Query: 361 ttatatatacatgtataatacagtaacctttctctctctctctctctctctctctctctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttatatatacatgtataatacagtaacctttctctctctctctctctctctctctctctc 168

                                                                       
Query: 421 tctctctctctaacacacacacacacacacacacacacacacacacacacacacacacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tctctctctctaacacacacacacacacacacacacacacacacacacacacacacacac 108

                         
Query: 481 acacacacaccagt 494
           ||||||||||||||
Sbjct: 107 acacacacaccagt 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 131
Number of extensions: 44
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)