BAC Information

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BAC

Clone NameMSMg01-518D12
Chromosome14 (Build37)
Map Location 70,082,777 - 70,083,359
singlet/doubletsinglet
Overlap geneLoxl2
Upstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4
Downstream geneR3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518D12.T7 (MSMg01no518_d12.b1)MSMg01-518D12.TJ (MSMg01no518_d12.g1)
ACCAG589779AG589780
length773773
length of high quality
(start - end)		661 (47 - 707)583 (73 - 655)
definitionCHROMAT_FILE: MSMg01no518_d12.b1 PHD_FILE: MSMg01no518_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:33 2005CHROMAT_FILE: MSMg01no518_d12.g1 PHD_FILE: MSMg01no518_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTACGCAGTTGAATCCTTCTCACAGTCTGTTTTACGGGAACACTTCA
TTACCTACCGTGACCCGCAGTTCTGGTTCCGGAATGAAGAATCTTCCTTG
CGCCGGTGATGGTTAACTCCCGTCCCGAGTTTTCTTGTCCCGGGTTTTTT
CGTCTCGGGTTCTTTCTTCCCGGGTTTCAGCACCAACTCTTACACGCGTT
CTCGCGACCGGCCAGGAAAGACGCAGCAAACCGGAATCTTCTGCGGCAAA
AGCTTTATTGCTTACATCTTTAGGAGCAAGAGTGCAAGAGAGCAAGAGCT
CTATTGCTTACATCTTTAGGAGCCAGAGCGCAAGAGTACAAGAGCGCAAG
CAAGAGAGCAAGAGCAAGAAGCAAGAGAGAGAATGGCGAAACCCCGTCCC
CTTTAAGGAAAATTATTCTCCGCCTAGGACGTATTACTCCCTGATTGGCT
GCAGCCCATCGGCCGAGTTGTCGTCACAGAGAAGGCAGAGCACATGTAGT
GGAAAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAAC
ACAGGATGTCAGCGCCATCTTGTAACGGCGAATGTGAGGGCGGCTCCCCA
CATTTCTTCACGTCGTTAAGAATGCTTCTAAAATATATTTTCCCTGCATA
TGTGGTGTATGTGTGTAAGTTCGGATCTATGTGTGCAAGTCAGATTGAAA
CACAAATCTTCCCATATGGCTCN

CCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATGACCTGTTACCGGGAAGGGCCAAAT
GGGACTGCAACTGCCTCTGACGTCATTACAGTGTTAGATCTGGATGGAAG
CCTAGATGGAGCACCCTGGGCTCTGATGTGCAGACCTCTGGGGGTCCTAC
TGAAATGCATATGGGTTCAACAGTCTGCAGCCAGCTCTGGCACTGAGCAT
GCCCAGGTTCTCACTGTGCTGGTAGATACGCAGTCCAAGGGCCTGGCTCT
GAAAGGCAGTAATCTAGTGCAAACATTTCCTGTTACAGATGGATTATTTG
AGTCCAGAGAAGAGGATCTATTAGAAGTTTGAGGACCTCTAGAAGAGGGA
TTCCTGGTGCAAGGAATGGCAGCTGCTTTTCCAACCATGTGCAAGCAGTG
TCCTCTACTTGCCCAGACCGAGAACAAAATATCTGAATCCGATTCAAGTC
AAGAAGAGCAAAGGAAAAAAAGGAGAGAGGAGGTCCAGAGAGCATCCATG
GGCCATGGTGGGATTGGCTGTAGGATTTCCCTCTATTCTACTGTCCTGAT
CCTGTCTTCGCAGCACCTGCATCCCAGCCACAGACAAGCTGGAAGGGAGC
CCAGAACTCCCAGGCAATGTGACCCAGTTGGCCTTACTTTCANGTTGTTG
TTGGTCAGTGGATTATCANGCTTACATCAAGTCTCATGACTCTGTCTGAG
TCCTGGAGTTCCTATCTCCATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_d12.g1 MSMg01no518_d12.g1 CHROMAT_FILE:
MSMg01no518_d12.g1 PHD_FILE: MSMg01no518_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:33 2005
         (583 letters)



>mm_chr14_70082577_70083559
          Length = 983

 Score = 1104 bits (571), Expect = 0.0
 Identities = 580/583 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgacctgttaccgggaagggccaaatgggactgcaactgcctctgacgtcattacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aatgacctgttaccgggaagggccaaatgggactgcaactgcctctgacgtcattacagt 724

                                                                       
Query: 61  gttagatctggatggaagcctagatggagcaccctgggctctgatgtgcagacctctggg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 723 gttagatctggatggaagcctagatggagcaccgtgggctctgatgtgcagacctctggg 664

                                                                       
Query: 121 ggtcctactgaaatgcatatgggttcaacagtctgcagccagctctggcactgagcatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggtcctactgaaatgcatatgggttcaacagtctgcagccagctctggcactgagcatgc 604

                                                                       
Query: 181 ccaggttctcactgtgctggtagatacgcagtccaagggcctggctctgaaaggcagtaa 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ccaggttctcactgtgctggcagatacgcagtccaagggcctggctctgaaaggcagtaa 544

                                                                       
Query: 241 tctagtgcaaacatttcctgttacagatggattatttgagtccagagaagaggatctatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tctagtgcaaacatttcctgttacagatggattatttgagtccagagaagaggatctatt 484

                                                                       
Query: 301 agaagtttgaggacctctagaagagggattcctggtgcaaggaatggcagctgcttttcc 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agaagtttgcggacctctagaagagggattcctggtgcaaggaatggcagctgcttttcc 424

                                                                       
Query: 361 aaccatgtgcaagcagtgtcctctacttgcccagaccgagaacaaaatatctgaatccga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaccatgtgcaagcagtgtcctctacttgcccagaccgagaacaaaatatctgaatccga 364

                                                                       
Query: 421 ttcaagtcaagaagagcaaaggaaaaaaaggagagaggaggtccagagagcatccatggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttcaagtcaagaagagcaaaggaaaaaaaggagagaggaggtccagagagcatccatggg 304

                                                                       
Query: 481 ccatggtgggattggctgtaggatttccctctattctactgtcctgatcctgtcttcgca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ccatggtgggattggctgtaggatttccctctattctactgtcctgatcctgtcttcgca 244

                                                      
Query: 541 gcacctgcatcccagccacagacaagctggaagggagcccaga 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gcacctgcatcccagccacagacaagctggaagggagcccaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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