BAC Information

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BAC

Clone NameMSMg01-518I11
Chromosome14 (Build37)
Map Location 123,622,134 - 123,622,777
singlet/doubletsinglet
Overlap genenone
Upstream geneClybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneVgcnl1, Itgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518I11.T7 (MSMg01no518_i11.b1)MSMg01-518I11.TJ (MSMg01no518_i11.g1)
ACCAG590016AG590017
length729735
length of high quality
(start - end)
677 (51 - 727)649 (81 - 729)
definitionCHROMAT_FILE: MSMg01no518_i11.b1 PHD_FILE: MSMg01no518_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:57 2005CHROMAT_FILE: MSMg01no518_i11.g1 PHD_FILE: MSMg01no518_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATATCCATACCTACACATGATAAAAGCAATCTACAACAA
ACCAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCAC
TAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTATAAAAC
ATTGTACTTGAAGTCCTAGTCAGAGCAATTCGACAACAAAAGGAGATCAA
GGGGATACAAATTGGAAAAGAAAAAGTCAAAATATCACTTTTTGCAGATG
ATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTA
AACCTGATAAACAGCTTCAATAAAGTAGCTGGATATAAAATTAACTCAAA
CAAGTCAATGGCCTTTCTCTACCCAAAGGATGAACAGGCTGAGAAAGAAA
CTTGGGAAACAACACCCTTCTCAATAGTCAGAAATAATATAAAATACCTT
GGCGTGACTCTAACTAAGGAAGTGAAAGATCTATATGATAAGAACTTCAA
GAATCTGAAGAAAGAAATTAAAGAAGATATCAGAAGATGGAAAGATCTCC
CATATTCATGGATTGGCAGGATCAATATACTAAAAATGACTATCTTGCCA
AAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATT
CTTCAATGAATTAGAAAGAGCAATCTGCN
AGGTCCGAATATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTATGTGGTAGGGAGTCT
TGTCTTCACATAATAGTGGGCCAGTAAGCAATTTTTGGAGTTAATTTTTT
TATAACCTGAAATTTTAGGACTAAAAAAATAAACTCAGCCAGACAGTGGT
GGCACATGCCATTAATCCCAGCACTTGGGAGGCAGGGCAGGCAGGTCTCA
AGGAGTTCAAGGTCAGCCTAGTCTAATGTGAGTTCTAGAATAGCTGTACA
TTTGAAACTTTTAGGCTTATGGTCCTGGTAGTCGGAAGAGGAGGGCACCC
AGGACCAGGAAAAGTGGAATAGATCCCACCCTCTGGAATAGACAGGTAGG
GAGGGAAACAGGTTGTGGACTGACAGTATATATCTGGATTTATACCTGTG
AGAGGTGGATTCAAGTAGATTTCCTGAAGCTTATAAGAATCTTTTAAGTT
TACAAAAAGAGATGAGATTTTAGATATGTTAACATTACCACTGTTTAATG
CTCTGAACTTTGAAGTCTTAATACAACAGTAGCATAGTCATGGGAAGAAA
TCTGAGGCATTTTTCTCCCATATACCTTAAATCATTTTCTCTTTGGCCAT
CCAGCCCTCTGTGGAGACTGACCTTACCTCATCTTAAGCAATGTGGGACA
ATGATCACTCCAGGTGTTCTGTTTGTCCACAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_i11.g1 MSMg01no518_i11.g1 CHROMAT_FILE:
MSMg01no518_i11.g1 PHD_FILE: MSMg01no518_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:57 2005
         (649 letters)



>mm_chr14_123621929_123622977
          Length = 1049

 Score = 1216 bits (629), Expect = 0.0
 Identities = 642/649 (98%), Gaps = 5/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtatgtggtagggagtcttgtcttcacataatagtgggccagtaagcaatttttggag 60
           |||||||||||||||||||||     ||||||||||||||||||||||||||||||||||
Sbjct: 206 atgtatgtggtagggagtctt-----cacataatagtgggccagtaagcaatttttggag 260

                                                                       
Query: 61  ttaatttttttataacctgaaattttaggactaaaaaaataaactcagccagacagtggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatttttttataacctgaaattttaggactaaaaaaataaactcagccagacagtggt 320

                                                                       
Query: 121 ggcacatgccattaatcccagcacttgggaggcagggcaggcaggtctcaaggagttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcacatgccattaatcccagcacttgggaggcagggcaggcaggtctcaaggagttcaa 380

                                                                       
Query: 181 ggtcagcctagtctaatgtgagttctagaatagctgtacatttgaaacttttaggcttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcagcctagtctaatgtgagttctagaatagctgtacatttgaaacttttaggcttat 440

                                                                       
Query: 241 ggtcctggtagtcggaagaggagggcacccaggaccaggaaaagtggaatagatcccacc 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ggtcctggtagtcggaagaggagggcacccaggaccagggaaagtggaatagatcccacc 500

                                                                       
Query: 301 ctctggaatagacaggtagggagggaaacaggttgtggactgacagtatatatctggatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctggaatagacaggtagggagggaaacaggttgtggactgacagtatatatctggatt 560

                                                                       
Query: 361 tatacctgtgagaggtggattcaagtagatttcctgaagcttataagaatcttttaagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatacctgtgagaggtggattcaagtagatttcctgaagcttataagaatcttttaagtt 620

                                                                       
Query: 421 tacaaaaagagatgagattttagatatgttaacattaccactgtttaatgctctgaactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacaaaaagagatgagattttagatatgttaacattaccactgtttaatgctctgaactt 680

                                                                       
Query: 481 tgaagtcttaatacaacagtagcatagtcatgggaagaaatctgaggcatttttctccca 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 tgaagtcttaatacaacagtagcatagtcatgggaagaaatctgaggtatttttctccca 740

                                                                       
Query: 541 tataccttaaatcattttctctttggccatccagccctctgtggagactgaccttacctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tataccttaaatcattttctctttggccatccagccctctgtggagactgaccttacctc 800

                                                            
Query: 601 atcttaagcaatgtgggacaatgatcactccaggtgttctgtttgtcca 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atcttaagcaatgtgggacaatgatcactccaggtgttctgtttgtcca 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)