Query= MSMg01no519_c10.b1 MSMg01no519_c10.b1 CHROMAT_FILE:
MSMg01no519_c10.b1 PHD_FILE: MSMg01no519_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:47 2005
(499 letters)
>mm_chr14_23738985_23739883
Length = 899
Score = 710 bits (367), Expect = 0.0
Identities = 417/453 (92%), Gaps = 30/453 (6%)
Strand = Plus / Minus
Query: 47 tgcctggcttttggtttaggcactgtggacagataagtaacatgggcatagactcttgac 106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 899 tgcctggcttttggtttaggcactgtggacagataagtaacatgggcatagactctggac 840
Query: 107 ttttgggaatcaaggaaggatgcttgagaagtaaagagatgaatgttataatactataat 166
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 839 ttttgggaatcaaggaaggatgcttgagaagtaaagagatgaatgttacaatactataat 780
Query: 167 tttctcccagctgagactaatgtgccaaagcagggagagagagagagagagagagagaga 226
||||||||||||||||||||||||||||||||||
Sbjct: 779 tttctcccagctgagactaatgtgccaaagcagg-------------------------- 746
Query: 227 gagagagagagagagagagagagagagagagagagagagagagagagagatctatttgta 286
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ----tagagagagagagagagagagagagagagagagagagagagagagatctatttgta 690
Query: 287 tgagatcccaggggaggggtatgggtgggaggaagataggcccaaagtaagaatcctgaa 346
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 689 tgagatcccaggggaggggtatgggtgggaggaagataggcccaaagcaagaatcctgaa 630
Query: 347 aggctacacttacagatatgctattaggaatgggaacaagcaggagaagcatcaagggaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aggctacacttacagatatgctattaggaatgggaacaagcaggagaagcatcaagggaa 570
Query: 407 cagaagatgaggggacaggagtgccatatcaagcttcagctactgagtcatgaagtgatc 466
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 569 cagaagatgaggggacaggagtgccatatcaagcttcagctacagagtcatgaagtgatc 510
Query: 467 aatatataattggggtgtgtggcaggagacatt 499
||| |||||||||||||||||||||||||||||
Sbjct: 509 aatgtataattggggtgtgtggcaggagacatt 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_c10.g1 MSMg01no519_c10.g1 CHROMAT_FILE:
MSMg01no519_c10.g1 PHD_FILE: MSMg01no519_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:47 2005
(572 letters)
>mm_chr14_23565779_23566750
Length = 972
Score = 1060 bits (548), Expect = 0.0
Identities = 566/572 (98%), Gaps = 1/572 (0%)
Strand = Plus / Plus
Query: 1 tttccttgctactcatctggagaacagcatatttaaaagtgtgactctgctaaataatag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tttccttgctactcatctggagaacagcatatttaaaagtgtgacactgctaaataatag 260
Query: 61 tagacatggtttgcaggtaagtggacctttaactgatgcagtttaaaatgaccagaaacc 120
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tagacatggtttgcaggtaagtgtacctttaactgatacagtttaaaatgaccagaaacc 320
Query: 121 aaaatgtaaaataaaataaaatgatgatgacgatgatgacaatgatgatttatttagtga 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 aaaatgtaaaataaaataaaatgatgatgatgatgatgacaatgatgatttatttagtga 380
Query: 181 gtattgtcctaagcagtactcagtttgttactgactcctcataacaacatcaaggaggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtattgtcctaagcagtactcagtttgttactgactcctcataacaacatcaaggaggtt 440
Query: 241 catggaatgctctccattaaaaaaaataaataaacaaatggtactactaataataacaaa 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 catggaatgctctccattaaaaaaa-taaataaacaaatggtactactaataataacaaa 499
Query: 301 actaataataaataaacggaaaccaaggctcagagagaccaagaaaattgcccaaggttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 actaataataaataaacggaaaccaaggctcagagagaccaagaaaattgcccaaggttg 559
Query: 361 cacatctagtcaagtggcaggtgaaaacagagggaatcttcgatcctttggtagtctata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cacatctagtcaagtggcaggtgaaaacagagggaatcttcgatcctttggtagtctata 619
Query: 421 aagtcccagaagcctattcagattagtgatttataaatagaaaaataaaaatattatgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagtcccagaagcctattcagattagtgatttataaatagaaaaataaaaatattatgag 679
Query: 481 aaagcagaataatcttcttaaatatcttgctatagagatatgtagggggttagttttggt 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 680 aaagcagaataatcttcttaaatatcttgctatagagatatgtagggggtcagttttggt 739
Query: 541 gatgtgaacctttactcatagcagtcaggagg 572
||||||||||||||||||||||||||||||||
Sbjct: 740 gatgtgaacctttactcatagcagtcaggagg 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
