BAC Information

Click to search

BAC

Clone NameMSMg01-519I01
Chromosome14 (Build37)
Map Location 104,726,203 - 104,726,857
singlet/doubletsinglet
Overlap genenone
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519I01.T7 (MSMg01no519_i01.b1)MSMg01-519I01.TJ (MSMg01no519_i01.g1)
ACCAG590760AG590761
length726729
length of high quality
(start - end)
680 (43 - 722)657 (71 - 727)
definitionCHROMAT_FILE: MSMg01no519_i01.b1 PHD_FILE: MSMg01no519_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:14 2005CHROMAT_FILE: MSMg01no519_i01.g1 PHD_FILE: MSMg01no519_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCATTGTCCGTGGGCAGGGGTCCTGAGGTTTCCCCTATCTCTGCTAT
CATTTCTGGTGCTGTCCTTCCTCAGGTCTTGCTTTGGTAGGCATAGTGCA
GAGATGTCACTGGTGAAGATGTCTTGCTCCTAGAAGACACATTCTCACGG
GTGGCTTCCTGGTAGTCTGGCTCTTACAAGCTTCCTGTCCCCTCTTCCAC
AATGTTCCCTGAGCCTTAGGTGTAGAAGTGGTCTATAGATGTATTGTCTG
AGGCTGGGCACTGCTAATCATTTGTTGTCTCCTCTTTGGCCAGTTGTGGT
AATGCTCTCCATCTGTCTTCTTTAATGATCTCCATCTATTTCAAAGAGAA
GTTTGTTGTCGAGTGGATATAAGGACACATATTTTAAATTCAGTAAGGAA
TTGTGCTCATTTAGTAGACTGGCAGCATTTGGGTCTTCTCTGGGATCTAT
AAGCCCTCTATTCTACCTATAGTTGGCTGGGTTTCCAGAACCAGATTCCA
CTCTTATTGAGTAGACCTTAAATACATTTAAGGTTCTGTCACCACTAAGG
TGTAAGTGTCACTATGGCACCCTTAGGATTATCATGTCTTATTAGTCATC
ATGGTTCATAGATGTCATAGCTGGGTAGGGCTATTGGTTGCTTGCATGTC
TTGGAAGCTTATATAACACCCTTCAG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGATGTCCTTAGAGACTAGAGGTATGAGGT
CTCCTGGAACTGGGTTTGGGTTCTGGGAACTGAACTTGAGACTTCGGGAA
GAGCATCAAGTGTTCGTAACTGATGAGCCATCTCTCCAGCCTCATCTCTA
CTCTTTTAAACAACAAAGAACTGGGCATAATTTTCTAAGTTATTTTGACC
AAAATGTTATAGCATTGCTTATGAGAGTGTTGTTTGAAACAAAATAGCAT
GTGTGTATGTATGTAGACATGCTCTCTCTTCAAAAGTTTTTAAATTATGA
AAATGAAGATGAGTATGTGAAAAATCTTTTTTATACATTGTTTTCATAGA
AATAATCTAGAGAATTATTTACTTTAGAACCTACTGAGTCAGTAAAATCA
GGCACTTTACAGAATTGATTTCCTGGTTCTCTTTAAGTGCACGGCTTATA
CTTCTTTAAATGAATGAATACAGCTTAGAGGTGAACAATTGGATTCTTCT
AGCTGATCTCTGACCAGGATTACATGCTGTGTAAGAAAATGACACTGACT
CATACAGAAAGGCACATATCATAGACACACACAGATATACACACAGACAC
AAAGAAACAATGTATATACTCAACCTAGGCCTTTTAAGAATGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_i01.g1 MSMg01no519_i01.g1 CHROMAT_FILE:
MSMg01no519_i01.g1 PHD_FILE: MSMg01no519_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:14 2005
         (657 letters)



>mm_chr14_104725919_104726975
          Length = 1057

 Score = 1220 bits (631), Expect = 0.0
 Identities = 649/655 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgtccttagagactagaggtatgaggtctcctggaactgggtttgggttctgggaac 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 agatgtccttagagagtagaggtatgaggtctcctggaactgggtttgggttctgggaac 880

                                                                       
Query: 61  tgaacttgagacttcgggaagagcatcaagtgttcgtaactgatgagccatctctccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 tgaacttgagacttcgggaagagcatcaagtgttcgtaactgatgagccatctctccagc 820

                                                                       
Query: 121 ctcatctctactcttttaaacaacaaagaactgggcataattttctaagttattttgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ctcatctctactcttttaaacaacaaagaactgggcataattttctaagttattttgacc 760

                                                                       
Query: 181 aaaatgttatagcattgcttatgagagtgttgtttgaaacaaaatagcatgtgtgtatgt 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 759 aaaatgttatagcattgcttatgagactgttgtttgaaacaaaatagcatgtgtgtatgt 700

                                                                       
Query: 241 atgtagacatgctctctcttcaaaagtttttaaattatgaaaatgaagatgagtatgtga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 699 atgtagacatgctctctcttcaaaagtttttaaattatgaaaatgaagataagtatgtga 640

                                                                       
Query: 301 aaaatcttttttatacattgttttcatagaaataatctagagaattatttactttagaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aaaatcttttttatacattgttttcatagaaataatctagagaattatttactttagaac 580

                                                                       
Query: 361 ctactgagtcagtaaaatcaggcactttacagaattgatttcctggttctctttaagtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ctactgagtcagtaaaatcaggcactttacagaattgatttcctggttctctttaagtgc 520

                                                                       
Query: 421 acggcttatacttctttaaatgaatgaatacagcttagaggtgaacaattggattcttct 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 519 acggcttatacttctttaaatgaatgagtacagcttagaggtgaacaattggattcttct 460

                                                                       
Query: 481 agctgatctctgaccaggattacatgctgtgtaagaaaatgacactgactcatacagaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agctgatctctgaccaggattacatgctgtgtaagaaaatgacactgactcatacagaaa 400

                                                                       
Query: 541 ggcacatatcatagacacacacagatatacacacagacacaaagaaacaatgtatatact 600
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggcacatatcatagacacacacatatatacacacagacacaaagaaacaatgtatatact 340

                                                                  
Query: 601 caacctaggccttttaagaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 655
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 339 caacctaggccttttaggaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)