Query= MSMg01no520_i04.b1 MSMg01no520_i04.b1 CHROMAT_FILE:
MSMg01no520_i04.b1 PHD_FILE: MSMg01no520_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:34 2005
(605 letters)
>mm_chr14_81784311_81785315
Length = 1005
Score = 1065 bits (551), Expect = 0.0
Identities = 583/601 (97%), Gaps = 14/601 (2%)
Strand = Plus / Plus
Query: 5 gaattctccaaggtttaagaaaagtgaggtcacgagttaaatcacaacttctcttcaact 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattctccaaggtttaagaaaagtgaggtcatgagttaaatcacaacttctcttcaact 264
Query: 65 ggaaacactatcaggtagcaactgaaaaatcaaaactttctatagcacaggtcttcaaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaaacactatcaggtagcaactgaaaaatcaaaactttctatagcacaggtcttcaaca 324
Query: 125 ggaatttccagttgaagtgaaatgttagtatagagaaatcagacccataggtgatattaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaatttccagttgaagtgaaatgttagtatagagaaatcagacccataggtgatattaa 384
Query: 185 gagaattcaggttttgaagaaaacccagtcaggaaatagcctctgcaaaactcaacctga 244
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagaattcaggttttaaagaaaacccagtcaggaaatagcctctgcaaaactcaacctga 444
Query: 245 gttttatcttctggaactatgacatgttttacaataaatatttgagaaatatcctctact 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 gttttatcttctggaactatgacatgtcttacaataaatatttgagaaatatcctctact 504
Query: 305 tatctggatgaggatagagtcatgaaatgactccatggagtctaaaatagacatcaaaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatctggatgaggatagagtcatgaaatgactccatggagtctaaaatagacatcaaaac 564
Query: 365 tttactcttttttctattgagaattctatcatgtatataacatgttcgatgaaatccatc 424
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 tttactcttttttctattgagaattctatcatgtatataacgtgttcgatgaaatccatc 624
Query: 425 cttcattgattcctctctcaattgctcttatatttatcctactaaaattttacctcatat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttcattgattcctctctcaattgctcttatatttatcctactaaaattttacctcatat 684
Query: 485 cttaatgtttgttctatatgtctctgtctctctgtgagtatttgtatctgtgtgtgtgtg 544
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 685 cttaatgtttgttctatatgtctctgtctctctgtgagtat----atctgtgtgtgtgtg 740
Query: 545 tgtgtgtgtgagagagagagagagagagagagagagggagagagagagagagagagagct 604
|| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 tg--------agagagagagagagagagagagagag--agagagagagagagagagagct 790
Query: 605 a 605
|
Sbjct: 791 a 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_i04.g1 MSMg01no520_i04.g1 CHROMAT_FILE:
MSMg01no520_i04.g1 PHD_FILE: MSMg01no520_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:35 2005
(640 letters)
>mm_chr14_81960996_81962030
Length = 1035
Score = 988 bits (511), Expect = 0.0
Identities = 551/567 (97%), Gaps = 5/567 (0%)
Strand = Plus / Minus
Query: 74 tatagcaaagggactgctgaaacacgactgcacaagtaaatcagcatctttaccaggcag 133
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 835 tatagcaaagggactgctgaaacacgactgcacaggtaaatcagcatctttaccaggcag 776
Query: 134 ccctggttttgttagagttcgagatgaagtggtctttgagggaaaaaaattccagaacag 193
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ccctg-----gttagagttcgagatgaagtggtctttgagggaaaaaaattccagaacag 721
Query: 194 gatatgtttaatagcgacaaactgggcaatccatcatgttgagtgagtttaaggagatat 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gatatgtttaatagcgacaaactgggcaatccatcatgttgagtgagtttaaggagatat 661
Query: 254 aatattttgaatcaaggagatctttgaaagattttcaagaaaaaaggagtgaagcgattc 313
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 660 aatattttgaatcaaggagatctttgaaagattttcaagaaaaaaggagtgaagggattc 601
Query: 314 ccattagaccacagcatgaacaaagacacaaggtttcctttgtgttttacagaaatgtga 373
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 600 ccattagaccacagcatgaacaaagacacaagctttcctttgtgctttacagaaatgtga 541
Query: 374 ggatgtcaggcacatactgtagaaacacaaatatgtgatttaaaaaatgatattgagaaa 433
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggatgtcaggcacatactctagaaacacaaatatgtgatttaaaaaatgatattgagaaa 481
Query: 434 atgagtggttaagtatgtagtgtcgatgactagtgtgtgctctctatgtcataattgaag 493
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 480 atgaggggttaagtatgtagtgccgatgactagtgtgtgctctctatgtcataattgaag 421
Query: 494 ataattagacaggattatcttgttctcaaagaaaagaacaattctgacaaggttgccttg 553
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ataattagtcaggattatcttgttctcaaagaaaagaacaattctgacaaggttgccttg 361
Query: 554 aaacagtgttataagcaacacaaatgaatgtatggaaaatagttattttctgttgtaaag 613
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aaacagtgttataagcaacataaatgaatgtatggaaaatagttattttctgttgtaaag 301
Query: 614 aagacagaaaatgtcatgttggcgaaa 640
|||||||||||| ||||||||| ||||
Sbjct: 300 aagacagaaaatatcatgttggagaaa 274
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1035
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1025
Effective search space: 645750
Effective search space used: 645750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
