BAC Information

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BAC

Clone NameMSMg01-520L01
Chromosome14 (Build37)
Map Location 82,085,123 - 82,184,512
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520L01.T7 (MSMg01no520_l01.b1)MSMg01-520L01.TJ (MSMg01no520_l01.g1)
ACCAG591662AG591663
length765768
length of high quality
(start - end)		698 (45 - 742)694 (75 - 768)
definitionCHROMAT_FILE: MSMg01no520_l01.b1 PHD_FILE: MSMg01no520_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:48 2005CHROMAT_FILE: MSMg01no520_l01.g1 PHD_FILE: MSMg01no520_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,184,028 - 82,184,512)(82,085,123 - 82,085,815)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTGTGATCTTTTTCTATGGCCTCTTCAGTACTTGACAATGAATAG
TAAGCTCTATTAAAATTTGTCCCAGATTTATGCTAGTATAATTTGACTGT
CTCACTTTTCCTTTGTAGTTTGGAATGCTGTAGGCTTTGATCAGTGATAA
TTTGCTTCCCTTGACCATAACTATCAACTCTGCTTTCATTAGGCATGACT
CCTGGTAGTCCCTTGTCTATGTCCTTAAAGTCAAGCACTTCCTTTACACA
TGTATAAATTACCACCAATGTAGTTAAGACACTTTGATTGATAATAGCCC
TTACAACAATCATAGGCTAACAAAAAACCTAGAATCAAGTACAAGAGAGC
TCCTTTTCCAGTCCTTGGTGAAGGTAATCCACATGACTCCCAAATCAATG
TAGAATATCTATATAGCAGTTGGTTGGCTGTCTGGGGGTGAGGGAGTGTT
GAAGGTGGGTTCCTAGGCTGAAGGCACTACACATTTAGGATACTAGGCTC
AGATGTTTAAATTGGATTTAACATGAAAGCTCCTTTCCTGTAATCTAGCT
GCCATGGTACCAGAAAATACTATTGAAACTGCCAAGAGAGGTGATCAACT
AAACAATCCTGGTTAGTTGAAATAGCTATGAGTAACAACAATATGTAGCG
TGGCAAGTTATATGTAAGGAATTTGATGTCAGACCTACTCAACAGAAGAC
GTAGAAGAGGTAGTA

CTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGTCCAGGATAATATACAAAGTGT
GATAATCCGACATTATTAACACCCAGCAGATGTAAATAAATATTCAACAC
ATGTCTTAAAAGAGGAAAAGTAGTGGAAGATTATAGAGTTTATATTTCAA
GGAGGAATTGGGCAAAAAACAAATCCAAACTCTAAGTCCTGACAAAGAAC
TTGGTGAAAACATTGAGCAAATTCACAACGGATGGTTGGAAATGCTTTGC
AATCATTAGTAATGGAGAGAATGATTTATCAGCTCTTGGAATACTTTGAA
ATATTATACTAGTTGTGAGTCTATTCTTTTTTGTATCTAATATGCAAAAA
TAATTAAGATTAAAGGAATTTGTGGGAGATAATATGTTCCAAAGTTCACA
GGTCGCACTGTTGCCTTTTGTGCTTGTTGCTTTGATTCTATTGCTTTTTC
CTCTCCTCACAGCATTATTTATTCAATCTGTTTAGTTTGCTTTACAGGCT
GTGGCAGCATCCACAGGGTGGACCTATTGAACCAAGCCGTAATAGATGTA
ATACATCAATACATTTGAGCTGAACAGCTTTAATTAGGCCTTCCCGGTCA
TTTCATCAATTCAGTTGAGTACCATTGGGATTTGGATAACACCGAGCCTC
CTGTCGAGCATGAGAATTACAGCACTTCAGCAAGGCTTCACCAGTCACAG
AGCAAGGTTAGGCAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_l01.b1 MSMg01no520_l01.b1 CHROMAT_FILE:
MSMg01no520_l01.b1 PHD_FILE: MSMg01no520_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:48 2005
         (698 letters)



>mm_chr14_82184028_82185125
          Length = 1098

 Score =  922 bits (477), Expect = 0.0
 Identities = 483/485 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctgtgatctttttctatggcctcttcagtacttgacaatgaatagtaagctct 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 485 gaattccctgtgatctttttctatggcctcttcagtacttgacaatgaatagtaggctct 426

                                                                       
Query: 65  attaaaatttgtcccagatttatgctagtataatttgactgtctcacttttcctttgtag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 attaaaatttgtcccagatttatgctagtataatttgactgtctcacttttcctttgtag 366

                                                                       
Query: 125 tttggaatgctgtaggctttgatcagtgataatttgcttcccttgaccataactatcaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tttggaatgctgtaggctttgatcagtgataatttgcttcccttgaccataactatcaac 306

                                                                       
Query: 185 tctgctttcattaggcatgactcctggtagtcccttgtctatgtccttaaagtcaagcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tctgctttcattaggcatgactcctggtagtcccttgtctatgtccttaaagtcaagcac 246

                                                                       
Query: 245 ttcctttacacatgtataaattaccaccaatgtagttaagacactttgattgataatagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttcctttacacatgtataaattaccaccaatgtagttaagacactttgattgataatagc 186

                                                                       
Query: 305 ccttacaacaatcataggctaacaaaaaacctagaatcaagtacaagagagctccttttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ccttacaacaatcataggctaacaaaaaacctagaatcaagtacaagagagctccttttc 126

                                                                       
Query: 365 cagtccttggtgaaggtaatccacatgactcccaaatcaatgtagaatatctatatagca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cagtccttggtgaaggtaatccacatgactcccaaatcaatgtagaatatctatatagca 66

                                                                       
Query: 425 gttggttggctgtctgggggtgagggagtgttgaaggtgggttcctaggctgaaggcact 484
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 65  gttggttggctgtctgggggtgagggagtgttcaaggtgggttcctaggctgaaggcact 6

                
Query: 485 acaca 489
           |||||
Sbjct: 5   acaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_l01.g1 MSMg01no520_l01.g1 CHROMAT_FILE:
MSMg01no520_l01.g1 PHD_FILE: MSMg01no520_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:49 2005
         (694 letters)



>mm_chr14_82084923_82086016
          Length = 1094

 Score = 1317 bits (681), Expect = 0.0
 Identities = 690/693 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtccaggataatatacaaagtgtgataatccgacattattaacacccagcagatgta 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtccagggtaatatacaaagtgtgataatccgacattattaacacccagcagatgta 260

                                                                       
Query: 61  aataaatattcaacacatgtcttaaaagaggaaaagtagtggaagattatagagtttata 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 aataaatattcaacacatgtcttaaaagagaaaaagtagtggaagattatagagtttata 320

                                                                       
Query: 121 tttcaaggaggaattgggcaaaaaacaaatccaaactctaagtcctgacaaagaacttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcaaggaggaattgggcaaaaaacaaatccaaactctaagtcctgacaaagaacttgg 380

                                                                       
Query: 181 tgaaaacattgagcaaattcacaacggatggttggaaatgctttgcaatcattagtaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaaacattgagcaaattcacaacggatggttggaaatgctttgcaatcattagtaatg 440

                                                                       
Query: 241 gagagaatgatttatcagctcttggaatactttgaaatattatactagttgtgagtctat 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagaatgatttatcagctcttgtaatactttgaaatattatactagttgtgagtctat 500

                                                                       
Query: 301 tcttttttgtatctaatatgcaaaaataattaagattaaaggaatttgtgggagataata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttttttgtatctaatatgcaaaaataattaagattaaaggaatttgtgggagataata 560

                                                                       
Query: 361 tgttccaaagttcacaggtcgcactgttgccttttgtgcttgttgctttgattctattgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttccaaagttcacaggtcgcactgttgccttttgtgcttgttgctttgattctattgc 620

                                                                       
Query: 421 tttttcctctcctcacagcattatttattcaatctgtttagtttgctttacaggctgtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttcctctcctcacagcattatttattcaatctgtttagtttgctttacaggctgtgg 680

                                                                       
Query: 481 cagcatccacagggtggacctattgaaccaagccgtaatagatgtaatacatcaatacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagcatccacagggtggacctattgaaccaagccgtaatagatgtaatacatcaatacat 740

                                                                       
Query: 541 ttgagctgaacagctttaattaggccttcccggtcatttcatcaattcagttgagtacca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgagctgaacagctttaattaggccttcccggtcatttcatcaattcagttgagtacca 800

                                                                       
Query: 601 ttgggatttggataacaccgagcctcctgtcgagcatgagaattacagcacttcagcaag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgggatttggataacaccgagcctcctgtcgagcatgagaattacagcacttcagcaag 860

                                            
Query: 661 gcttcaccagtcacagagcaaggttaggcaatc 693
           |||||||||||||||||||||||||||||||||
Sbjct: 861 gcttcaccagtcacagagcaaggttaggcaatc 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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