Query= MSMg01no520_n09.b1 MSMg01no520_n09.b1 CHROMAT_FILE:
MSMg01no520_n09.b1 PHD_FILE: MSMg01no520_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:59 2005
(725 letters)
>mm_chr14_24104713_24105837
Length = 1125
Score = 1313 bits (679), Expect = 0.0
Identities = 713/729 (97%), Gaps = 12/729 (1%)
Strand = Plus / Plus
Query: 4 ggaattccagccccacccatgcacctactggcaactgtcagttattaggagatgaagaga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagccccacccatgcacctactggcaactgtcagttattaggagatgaagaga 263
Query: 64 gagttttctctaagagtgtagactctagtcaaccaggatgctgtggaagaccacacaccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagttttctctaagagtgtagactctagtcaaccaggatgctgtggaagaccacacaccc 323
Query: 124 aggcaacacaaattagtgttgataagaaaacaaaagaggtcaggacacaaagattagtgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggcaacacaaattagtgttgataagaaaacaaaagaggtcaggacacaaagattagtgg 383
Query: 184 atagggcaaggtggggtggtgttgctatgaaagagttaaaatacattgtaagaaattaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atagggcaaggtggggtggtgttgctatgaaagagttaaaatacattgtaagaaattaat 443
Query: 244 aaaattgtttttaaaattgaaaaatattaaattattaaaatgttaaaataaaaaatgttc 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 aaaattgtttttaaaattgaaaaatattaaattattaaaatgttaaaataaaaaatgtcc 503
Query: 304 catttaatactaaggaaagtagtaaagat---aaaaataagacagacttaaaa---taca 357
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 504 catttaatactaaggaaagtagtaaagataagaaaaataagacagacttaaaatttt--- 560
Query: 358 aaaaaaaagtgaaatatattaatga-ttatcttattgctgtgatgaaacaccactgtgaa 416
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 561 -aaaaaaagtgaaatatattaatgactt-tcttattgctgtgatgaaacaccactgtgaa 618
Query: 417 aggtagcatgtaggaaaatgagtttattttagcttactgttccagaggcgaaagagtcca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggtagcatgtaggaaaatgagtttattttagcttactgttccagaggcgaaagagtcca 678
Query: 477 tcatgattgagatgcagggctacacacagcaggcgaggtggcagaaacaggaagcctaga 536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 679 tcatgattgagatgcagggctacacacagcaggcgaggtggcagaaataggaagcctaga 738
Query: 537 gaccatatctcaactataagttgtaagcagagacactgaactgcaggcaggttagataaa 596
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gatcatatctcaactataagctgtaagcagagacactgaactgcaggcaggttagataaa 798
Query: 597 gctctatcctgccccaggtgacatatttcctccagcgtggtcacacctcctaaacctcct 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gctctatcctgccccaggtgacatatttcctccagcgtggtcacacctcctaaacctcct 858
Query: 657 ccaaacaatgctaccaactagggaccaagtattcgaatttctcaatctactgggacattc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ccaaacaatgctaccaactagggaccaagtattcgaatttctcaatctactgggacattc 918
Query: 717 tcattcaaa 725
|||||||||
Sbjct: 919 tcattcaaa 927
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 1125
Length adjustment: 10
Effective length of query: 715
Effective length of database: 1115
Effective search space: 797225
Effective search space used: 797225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_n09.g1 MSMg01no520_n09.g1 CHROMAT_FILE:
MSMg01no520_n09.g1 PHD_FILE: MSMg01no520_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:00 2005
(682 letters)
>mm_chr14_24263545_24264626
Length = 1082
Score = 1265 bits (654), Expect = 0.0
Identities = 675/682 (98%)
Strand = Plus / Minus
Query: 1 tggggacagtgagccatctatctcttgcacatcactgtaaaactcaagaaatgggagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 tggggacagtgagccatctatctcttgcacatcactgtaaaactcaagaaatgggagtga 823
Query: 61 ctctgtgtgtaccaaagttaatttacagtagccactttccagatgttgtgcagagaccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ctctgtgtgtaccaaagttaatttacagtagccactttccagatgttgtgcagagaccac 763
Query: 121 atgttcacaagaggtcaattaacatcgaagacaaaatggcgagcaggctggtaaagctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 atgttcacaagaggtcaattaacatcgaagacaaaatggcgagcaggctggtaaagctgt 703
Query: 181 aacagcttgtttactctcactttttaatcactggctgatatttatagaaaccaaagatta 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 702 aacagcttgtttactctcactttttaatcaccggctgatatttatagaaaccaaagatta 643
Query: 241 agggcatattgtatccttaacacataagcatatgcctttattctcttagaaacattgaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 agggcatattgtatccttaacacataagcatatgcctttattctcttagaaacattgaca 583
Query: 301 cccacgggttatatattgcatttcctggattaggagagtgaggcttagctgcctccaaat 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cccaggggttatatattgcatttcctggattaggagagtgaggcttagctgcctccaaat 523
Query: 361 gaccagaggcagaccccaatggtttctggatgtacgcaccttagtacttcactaacattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 522 gaccagaggcagaccccaatggtttctggatgtacgcaccttagtacttcactaacaatg 463
Query: 421 ctagagcctgagacttgaatgcccggtgacctccagcaccaagcaagccctctccagagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctagagcctgagacttgaatgcccggtgacctccagcaccaagcaagccctctccagagc 403
Query: 481 actgattcagttaaaaggcatttgaagaccacaatacattccgttgacgtgcattctcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 actgattcagttaaaaggcatttgaagaccacaatacattccgttgacgtgcattctcta 343
Query: 541 gacttcaaatcccgggatggcactgacctgcattctctagactgtcaattcctggatgtc 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 342 gacttcaaatcccgggatggcactgacctgcattctctagactgccaattcctggatgtc 283
Query: 601 acactacagtccaattcttgctcagtgtacatgaagatctaaggaaataaaaaagaaacc 660
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 282 acactatagaccaattcttgctcagtgtacatgaagatcgaaggaaataaaaaagaaacc 223
Query: 661 tctcttgatgggaaccttgaga 682
||||||||||||||||||||||
Sbjct: 222 tctcttgatgggaaccttgaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
