BAC Information

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BAC

Clone NameMSMg01-520P08
Chromosome14 (Build37)
Map Location 114,914,147 - 114,914,815
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382947, LOC668791, LOC100043821
Downstream geneLOC100043521, Gpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520P08.T7 (MSMg01no520_p08.b1)MSMg01-520P08.TJ (MSMg01no520_p08.g1)
ACCAG591867AG591868
length728737
length of high quality
(start - end)
633 (74 - 706)651 (84 - 734)
definitionCHROMAT_FILE: MSMg01no520_p08.b1 PHD_FILE: MSMg01no520_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:09 2005CHROMAT_FILE: MSMg01no520_p08.g1 PHD_FILE: MSMg01no520_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGAAAACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTCTGTGATCCACCCCAACAGTTACCTGGCAACAGCCAG
AATGGCTCAGCCTATTGTAAAAGGAGCTGCTTTCACCACCCTCTCTCATT
CTCTCATTCTTACTCTTGCTCCCCTGCTTCCCTTCTCGCCTGTCCCTTTC
TTCCCTCTCTCCATGTGACCATGGCCAGCTTCTACTTCTCTACTCTTCTC
CCTCTCTCTGCCTTTCTACAATAAACCCCTTAATACCATGGACTTCCTCT
TCTCATCGGAACCTGCCGTGCTAGAGCAATGGAGCAGGTCTTCCTCTAAC
AAGTCATGAGTCTAACCTCCCACAGGGAGGCCTCACAGCATTTCCAACCA
CAGCTGCCACCAACCCAAGCCACCCGCAGAAAAAGCCACCAGGCAAGCTA
TGGACTCTCTCGTCCCCATTGGTAACCTGCCAGAGTCTGTCCACAGGCCC
TACTCCATTCTCTGCTACATCCAGAGGCATCTGAGGTGACCAAGACTGAG
AACCTGACGTCCATGGCCTCCGTGCAGCCCTGGGACCCCAGAACCTGTTC
TTCTACAGCACCCAGCGGCTCTGTGATGCCTAAGAGTCTGAGCCTGACTC
AGGTAGGTCCTTGGGGACCCCAGACTGTGCCTTCCTCACCTCCGGAGCTG
GGTCCTGTGGCTTCTCACAGCCAGATGN
AAAANAACTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTGTGAGGATTTTA
TTGAATATTTTTGCATCAATATTCATAAGAGAAATTGGTCTGAAGTTCTT
TTTCTTTGTTGGATCTTTGTGTAGTTTACGTATCAGAGTAATTGTGGCTT
TGTAGAATGAATAGAGTAGAGTACCTTCTGTTTCTATTTGTGGAATAGTT
TGAGGAGAGTTGGAATTAGGTCTTCTTTGAGGTCTGATAAAATTCTTCAC
CAAACCCATCTGGTCCTGGGCTTTATTTATTTATTTATTTATTGGTTGGG
AGACTATTAATGACTGCTTCTTTTTCCTTCGGGAAAATGGGACTGTTTAG
ATCAATAATCTGATCCTGATTTAATTTTGGTACCTAGTATACGCCTAGGA
AGTTGTCTATTTCATCCAAATTTTCCAGTTTTGTTGAGTATAGCCTTTTT
TAGTAGGATCTAATGATGTTTTGAATTTCCTCAGGATCTGTTGTTATGTC
TCCTTTTTCATTTCTGATTTTTCATTTTTATCTTCATGATAGAATTAGGA
TATACACCCTGTGTCCTCTAGTTAGTCTGGTTAAAGGTTTATCTATCTTG
TTGATTTTCTCAAAGAACCAGCTCCTGGTTTGGTTGATGCTACATCCACT
CCAGTAGTGACAAGTGCAACAGGCCCCGAAAACCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_p08.b1 MSMg01no520_p08.b1 CHROMAT_FILE:
MSMg01no520_p08.b1 PHD_FILE: MSMg01no520_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:09 2005
         (633 letters)



>mm_chr14_114913983_114915015
          Length = 1033

 Score = 1058 bits (547), Expect = 0.0
 Identities = 622/669 (92%), Gaps = 36/669 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccaacagttacctggcaacagccagaatggctcagcctattgtaaaaggagctgcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ccccaacagttacctggcaacagccagaatggctcagcctattgtaaaaggagctgcttt 224

                                                                       
Query: 61  caccaccctctctcattctctcattcttactcttgctcccctgcttcccttctcgcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 caccaccctctctcattctctcattcttactcttgctcccctgcttcccttctcgcctgt 284

                                                                       
Query: 121 ccctttcttccctctctccatgtgaccatggccagcttctacttctctactcttctccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ccctttcttccctctctccatgtgaccatggccagcttctacttctctactcttctccct 344

                                                                       
Query: 181 ctctctgcctttctacaataaaccccttaataccatggacttcctcttctcatcggaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctctctgcctttctacaataaaccccttaataccatggacttcctcttctcatcggaacc 404

                                                                       
Query: 241 tgccgtgctagagcaatggagcaggtcttcctctaacaagtcatgagtctaacctcccac 300
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| 
Sbjct: 405 tgccgtgctagagcaatggagcaggtcttcccctaacaagtcatgagtttaacctcccaa 464

                                                                       
Query: 301 agggaggcctcacagcatttccaaccacagctgccaccaacccaagccacccgcagaaaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 465 agggaggcctcacagcatttccaaccacagctgccaccaacccaagccacccgcagaaca 524

                                                                       
Query: 361 agccaccaggcaagctatggactctctcgtccccattggtaacctgccagagtc------ 414
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||      
Sbjct: 525 agccaccaggcaagccatggactctctcgtccccattggtaacctgccagagtcctctta 584

                                                                       
Query: 415 ------------tg--------------tc----cacaggccctactccattctctgcta 444
                       ||              ||    ||||||||||||||||||||||||||
Sbjct: 585 cccttttccccttgacaccaggccagagtctgcccacaggccctactccattctctgcta 644

                                                                       
Query: 445 catccagaggcatctgaggtgaccaagactgagaacctgacgtccatggcctccgtgcag 504
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 645 catccagaggcatctgaggtgaccaagactgagaacctgacgtccatggcctccatgcag 704

                                                                       
Query: 505 ccctgggaccccagaacctgttcttctacagcacccagcggctctgtgatgcctaagagt 564
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct: 705 ccctgggaccccagaacctgctcttctacagcacccagcggctctgtggtgcccaagagt 764

                                                                       
Query: 565 ctgagcctgactcaggtaggtccttggggaccccagactgtgccttcctcacctccggag 624
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 765 ctgagcctgactcaggtaggtctttggggaccccagactgtgccttccccacctccggag 824

                    
Query: 625 ctgggtcct 633
           |||||||||
Sbjct: 825 ctgggtcct 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)