BAC Information

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BAC

Clone NameMSMg01-521C17
Chromosome14 (Build37)
Map Location 99,435,701 - 99,609,036
singlet/doubletdoublet
Overlap gene2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e
Upstream geneDach1, LOC635593, LOC619716, LOC100043787
Downstream geneLOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521C17.T7 (MSMg01no521_c17.b1)MSMg01-521C17.TJ (MSMg01no521_c17.g1)
ACCAG592027AG592028
length746732
length of high quality
(start - end)		607 (50 - 656)650 (80 - 729)
definitionCHROMAT_FILE: MSMg01no521_c17.b1 PHD_FILE: MSMg01no521_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:25 2005CHROMAT_FILE: MSMg01no521_c17.g1 PHD_FILE: MSMg01no521_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:25 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(99,608,434 - 99,609,036)(99,435,701 - 99,436,350)
sequence
GTTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAGACAACTACGGCTATTACACAGAGAAACCTTGTGTAAA
ACAAAAACAAAACTCCAAACAAACACACATACATATGTACATATATCATC
ATTCAACAGCTTTTATCTCTTCATATTCCCTTTAGTTTTTAAAATATATA
GTTATGTTCCTTAATCATTTTATATAATTAAAAAAAAATTAAAAATCATG
GTTAAACAATTTTTTTTAACCATTTCCATTTTTTGGGGAGTGGGGTGGGG
GCTAAAACCCTGTGCCACCTTGTCCAGCACATTAAAAAAATTTTTTTTCC
TGGTACTAAAACTGTCTTTCATTGTTTATTCTTACATTTATTTTAAAAGA
CTTAAGACACAATCAGTAAAAACAAAGTAAATCAGACGCTAAGTGTGGAG
AGGCAAGACACCCTAGGAGCTACGTTTATGAACTCTGCTCAAGTTCCAGG
GCGCATGGGCTGACAGGCCAGCTGAAGGACGGACACTATGAGCAGACAGA
TAACTGAACCACATATAGTGAAATTTTTAGTAACCCATTAAAGAAGCAAG
GATATCTAAAAAGATCTGTAACAAAGCAATGGTCCCTTGATTCTTAAGTC
GTCTTAGACAAGGGTCACTAGTGCATTAAACAATTTTTAAGTGTACAATT
CAGTGGCTTTAATTATGCTCACAATGTTTTAGAACCATTGTACTTA

CTTCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGAAGTCAGCTTGTGTTT
TCAGCAGCCTAGACAAAACAAGAGAGCAAGATCCATTATTTTAAGAAACC
ATAGTTAAGACAACCATGGAGGTAAATCTACCTATACCATATTTAACAAA
CAGCTAGTTATTCCACATCACAACTCAATTGGTTTTACTGGAAAAATACA
ATGATTTTTATTTTTTGTTGTATTATCAGATATTTTAAATTTACTGCCAG
ATTATAAAAAGAAGGAGTCATTTATATAATAGAGATCATGTAAAATGTAC
TACTTCTTTAAGAGTTAACACATAACTTGTTTTCCAAGGTCTTCATTAGT
TTTTTTTTACTATAGTGTAAAGACAGAATTAATAATGAGAAAGACCTAGT
AAGCTACAAATAAAGAATACCAGCAAACAGGGAAGATATTTGTAATTTTT
CTTCTTTTTATTTCTTTTTTATTTTTGCTAAAAGGTATTTATGGTATTTT
ACTTAAAAACAGAAATAATTTTATTGTAATGAACTCAGAAATAGAGAAAT
CACGCTTGAACTCGCAGTCCCAAGCTGCACATAGTTCACTGACACAGCCA
GCCATGCAGCTTCATTCAGTGCTTTACCTTCAGTACCAATTACATTTTAT
GTTCTGATGCAGACGCACAGACGGAGCGGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_c17.b1 MSMg01no521_c17.b1 CHROMAT_FILE:
MSMg01no521_c17.b1 PHD_FILE: MSMg01no521_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:25 2005
         (607 letters)



>mm_chr14_99608037_99609043
          Length = 1007

 Score = 1166 bits (603), Expect = 0.0
 Identities = 603/603 (100%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattccaagacaactacggctattacacagagaaaccttgtgtaaaacaaaaacaaaac 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 gaattccaagacaactacggctattacacagagaaaccttgtgtaaaacaaaaacaaaac 941

                                                                        
Query: 65   tccaaacaaacacacatacatatgtacatatatcatcattcaacagcttttatctcttca 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  tccaaacaaacacacatacatatgtacatatatcatcattcaacagcttttatctcttca 881

                                                                        
Query: 125  tattccctttagtttttaaaatatatagttatgttccttaatcattttatataattaaaa 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  tattccctttagtttttaaaatatatagttatgttccttaatcattttatataattaaaa 821

                                                                        
Query: 185  aaaaattaaaaatcatggttaaacaattttttttaaccatttccattttttggggagtgg 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  aaaaattaaaaatcatggttaaacaattttttttaaccatttccattttttggggagtgg 761

                                                                        
Query: 245  ggtgggggctaaaaccctgtgccaccttgtccagcacattaaaaaaattttttttcctgg 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  ggtgggggctaaaaccctgtgccaccttgtccagcacattaaaaaaattttttttcctgg 701

                                                                        
Query: 305  tactaaaactgtctttcattgtttattcttacatttattttaaaagacttaagacacaat 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  tactaaaactgtctttcattgtttattcttacatttattttaaaagacttaagacacaat 641

                                                                        
Query: 365  cagtaaaaacaaagtaaatcagacgctaagtgtggagaggcaagacaccctaggagctac 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  cagtaaaaacaaagtaaatcagacgctaagtgtggagaggcaagacaccctaggagctac 581

                                                                        
Query: 425  gtttatgaactctgctcaagttccagggcgcatgggctgacaggccagctgaaggacgga 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580  gtttatgaactctgctcaagttccagggcgcatgggctgacaggccagctgaaggacgga 521

                                                                        
Query: 485  cactatgagcagacagataactgaaccacatatagtgaaatttttagtaacccattaaag 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520  cactatgagcagacagataactgaaccacatatagtgaaatttttagtaacccattaaag 461

                                                                        
Query: 545  aagcaaggatatctaaaaagatctgtaacaaagcaatggtcccttgattcttaagtcgtc 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460  aagcaaggatatctaaaaagatctgtaacaaagcaatggtcccttgattcttaagtcgtc 401

               
Query: 605  tta 607
            |||
Sbjct: 400  tta 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_c17.g1 MSMg01no521_c17.g1 CHROMAT_FILE:
MSMg01no521_c17.g1 PHD_FILE: MSMg01no521_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:25 2005
         (650 letters)



>mm_chr14_99435501_99436550
          Length = 1050

 Score = 1257 bits (650), Expect = 0.0
 Identities = 650/650 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggaagtcagcttgtgttttcagcagcctagacaaaacaagagagcaagatccattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggaagtcagcttgtgttttcagcagcctagacaaaacaagagagcaagatccattat 260

                                                                       
Query: 61  tttaagaaaccatagttaagacaaccatggaggtaaatctacctataccatatttaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaagaaaccatagttaagacaaccatggaggtaaatctacctataccatatttaacaa 320

                                                                       
Query: 121 acagctagttattccacatcacaactcaattggttttactggaaaaatacaatgattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagctagttattccacatcacaactcaattggttttactggaaaaatacaatgattttt 380

                                                                       
Query: 181 attttttgttgtattatcagatattttaaatttactgccagattataaaaagaaggagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttttgttgtattatcagatattttaaatttactgccagattataaaaagaaggagtc 440

                                                                       
Query: 241 atttatataatagagatcatgtaaaatgtactacttctttaagagttaacacataacttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttatataatagagatcatgtaaaatgtactacttctttaagagttaacacataacttg 500

                                                                       
Query: 301 ttttccaaggtcttcattagtttttttttactatagtgtaaagacagaattaataatgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttccaaggtcttcattagtttttttttactatagtgtaaagacagaattaataatgag 560

                                                                       
Query: 361 aaagacctagtaagctacaaataaagaataccagcaaacagggaagatatttgtaatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagacctagtaagctacaaataaagaataccagcaaacagggaagatatttgtaatttt 620

                                                                       
Query: 421 tcttctttttatttcttttttatttttgctaaaaggtatttatggtattttacttaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttctttttatttcttttttatttttgctaaaaggtatttatggtattttacttaaaaa 680

                                                                       
Query: 481 cagaaataattttattgtaatgaactcagaaatagagaaatcacgcttgaactcgcagtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaaataattttattgtaatgaactcagaaatagagaaatcacgcttgaactcgcagtc 740

                                                                       
Query: 541 ccaagctgcacatagttcactgacacagccagccatgcagcttcattcagtgctttacct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaagctgcacatagttcactgacacagccagccatgcagcttcattcagtgctttacct 800

                                                             
Query: 601 tcagtaccaattacattttatgttctgatgcagacgcacagacggagcgg 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcagtaccaattacattttatgttctgatgcagacgcacagacggagcgg 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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