BAC Information

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BAC

Clone NameMSMg01-521D22
Chromosome14 (Build37)
Map Location 41,909,028 - 41,909,519
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC218945, LOC100040470, LOC382876, Sh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1
Downstream geneMat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521D22.T7 (MSMg01no521_d22.b1)MSMg01-521D22.TJ (MSMg01no521_d22.g1)
ACCAG592085AG592086
length755747
length of high quality
(start - end)		645 (47 - 691)632 (80 - 711)
definitionCHROMAT_FILE: MSMg01no521_d22.b1 PHD_FILE: MSMg01no521_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:31 2005CHROMAT_FILE: MSMg01no521_d22.g1 PHD_FILE: MSMg01no521_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGC
GGAATTCTCCATTGCTTTACCAACTTCTGCTGTTCCTTATGCAAATCTTA
CAAACCATGAGTTATTGAGCAAAAACTGTGGGGTCATCCTTGACTTCTTG
CCCTCACATCCCTTATCTAGGATCCCCTTGGCTGTGCTTTCCATCCGCTC
AGCTTCTGAGAACTGGCAGCCTCAGCCTTGCCTGTGTGTTGTTCCTGCCA
CCGTATCTTTGCCCTAGATCCCAGCCCCCATTCCCCAGTGACCTCCCTGC
TTACCAGCTTTGATCGTCTATAGATCCTTCTCTACAAGCAGCCAGAATAT
AGGACATTGGATCCTGTTTCCCTTCTTCTTAGAACCCTCCCACAGACTCC
CATCTTGGTCACAAAAACTCAGAACTTAGAAGCCAACAGGATGGTTCAGT
GTATAAAAGCACTTCTCACCCAAGCCTGAAGACCTGAGTTTGATTCCCCA
GGGCTCCTGGTAGGAGGAGAAAACCCACTCCCAAAGCTTGTGTTCTCACC
TCCATAGCTTCCACAAGCATGCCATGCTTGTGCCTGCATTTACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACATATCACCACCACCAGTCAGGATCAGGAGGAGCCTAGTT
CTGGAAAGGTCTTTAAATATGACTCTTGCTCTTCTTACTTTATTATTTAT
TTTAG

NNNCCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGACTACTTTGGAAAGCA
ATGTAACTTCTCTCTAGGATCTTGAGAATGGACATAAGCTATGCCCAAGG
TTTTCACAATTTTCCCTTGTGTATTCTAGAGCACCACATCTACAGCTGGG
AATTTAGTAGCCATACTAATTCTCAATCAGGGTGCAGTGGTAGACACAGG
AGAATTGGGAGTTCAAGACTACAAGAGACCCTTCCTAAATAAACAAAAAA
AATAAAGAAAAAGCAGAAAAGTGTGTAAGTTGTTCAGCCCCAGCTCAGAC
GTACTGAGTGGGAGTTGGAACATCGTGATTTTTTTAATCTGAAGGTCAGT
AGTAGGGAGCAAGTACTGACCTGGGAAGAAGAGCTGCATGGGGTTTCTAT
AGTTGAGACAAAAAAAGTCTGTAATGACTGCTTAGTATTGATGAAATGAG
CCTGTCTTGGGAGCATAAAGCCTATGCATCCTAAGACTCCGAGATGCTGC
TTTTGGGTGCTGATGTTGCAGGATTCAAATGAAAGCCCTTCTTTGCCTAC
AGCTAAAGAAGCCTGAAATATTCAAGTCTCTGAACATTCCCCATTTGTTA
TCTCCAGAAGAACAAAGTTTGACAGCATTGTCTGAAGACTGGTCATTGGA
CTATTTTATGCCACAGGCAAGAAAAGAATTTTACAGGCTAAAATAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_d22.g1 MSMg01no521_d22.g1 CHROMAT_FILE:
MSMg01no521_d22.g1 PHD_FILE: MSMg01no521_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:31 2005
         (632 letters)



>mm_chr14_41909028_41910060
          Length = 1033

 Score =  936 bits (484), Expect = 0.0
 Identities = 490/492 (99%), Gaps = 1/492 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgactactttggaaagcaatgtaacttctctctaggatcttgagaatggacataagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcatgactactttggaaagcaatgtaacttctctctaggatcttgagaatggacataagc 433

                                                                       
Query: 61  tatgcccaaggttttcacaattttcccttgtgtattctagagcaccacatctacagctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tatgcccaaggttttcacaattttcccttgtgtattctagagcaccacatctacagctgg 373

                                                                       
Query: 121 gaatttagtagccatactaattctcaatcagggtgcagtggtagacacaggagaattggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaatttagtagccatactaattctcaatcagggtgcagtggtagacacaggagaattggg 313

                                                                       
Query: 181 agttcaagactacaagagacccttcctaaataaac-aaaaaaaataaagaaaaagcagaa 239
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 312 agttcaagactacaagagacccttcctaaataaacaaaaaaaaataaagaaaaagcagaa 253

                                                                       
Query: 240 aagtgtgtaagttgttcagccccagctcagacgtactgagtgggagttggaacatcgtga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aagtgtgtaagttgttcagccccagctcagacgtactgagtgggagttggaacatcgtga 193

                                                                       
Query: 300 tttttttaatctgaaggtcagtagtagggagcaagtactgacctgggaagaagagctgca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tttttttaatctgaaggtcagtagtagggagcaagtactgacctgggaagaagagctgca 133

                                                                       
Query: 360 tggggtttctatagttgagacaaaaaaagtctgtaatgactgcttagtattgatgaaatg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tggggtttctatagttgagacaaaaaaagtctgtaatgactgcttagtattgatgaaatg 73

                                                                       
Query: 420 agcctgtcttgggagcataaagcctatgcatcctaagactccgagatgctgcttttgggt 479
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  agcctgtgttgggagcataaagcctatgcatcctaagactccgagatgctgcttttgggt 13

                       
Query: 480 gctgatgttgca 491
           ||||||||||||
Sbjct: 12  gctgatgttgca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space:   636306
Effective search space used:   636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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