BAC Information

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BAC

Clone NameMSMg01-521G10
Chromosome14 (Build37)
Map Location 63,825,532 - 63,825,977
singlet/doubletsinglet
Overlap geneGata4
Upstream geneDleu7, Rnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2
Downstream geneLOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521G10.T7 (MSMg01no521_g10.b1)MSMg01-521G10.TJ (MSMg01no521_g10.g1)
ACCAG592205AG592206
length748777
length of high quality
(start - end)
457 (72 - 528)60 (240 - 299)
definitionCHROMAT_FILE: MSMg01no521_g10.b1 PHD_FILE: MSMg01no521_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:44 2005CHROMAT_FILE: MSMg01no521_g10.g1 PHD_FILE: MSMg01no521_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCTCTCTGATTCATGCCATCTACGTTTTTTTTTTGTCCCTAAGCA
TAGCCACCTTGGTCTCCATATTACCCCTTTCCTGATACCAAAGGCAATGC
TGAGTTCTTCTCCGGGAAAGCCAGTGGTACCCCTTAAAAGTGGACCCCTT
AAAGGTCCTTCCCTCCTTTAGCCCCAGGCCTGGGGTTTGCCAGCTCTGCT
GTTCAGTAATCCGTACTAAGAGAACGTTGGCTGGAAACGGATAGGGCACC
CTCCTCATAACTCTGGGTACATAAACAGTCATTTACACCTGCAAACAGGT
AGCAGTGTGTCTATGCCAAGCAAACAATATACAGGTGCGAGGGGCCGTTT
GCTCAAGCCAGGGAGTTAAGTGAGCACAGAGGCTATTTTTACACCTGTGT
CACACTGAAGGCCTTTCATCAAGGTCACCTGCCTCTAGAGGTGACTCTTG
CCCATGGCCTGCCCTCTACTGGGCCACCACCATCACCAGCACCAGCACCA
GCACCAGCACCAGCAGCTTGTCATCTGCAGCCTGTCAGCCTGGCTCTTTC
CTCTCAAGCCCTCTCCTGAGAACAGTATAAAGGTCAGGAGTTCCCAGAGC
CAGTAGCCAGCAGGGCTGAGAGGGAGTTAGCAGTAGGCTTTTGTTCGCCA
TGAACACTAGATGGCACTACAGCCTCTAAATGTAACCAAGACCACATG
TTTCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCACCGTGACCTGCGGGCAGCCA
ACATCCTGGTGTCTGAGACGTTGTGCTGCAAAATCGCTGACTTCGGCTTG
GCCAGGATCATTGACAGTGAATACATTGCCCAAGAGGGTGAGCAGAGTGT
GTGAGTGTACACACACACTCACACACACACACACACATGAAAGCCTTTGA
ACGTCTCAACTCTCTGGAGCCCCCTTGAATGTCTCCTTGCTGTTGGAGAT
GACTAGGGAGACCCATGTTTTTTGTGTTTGGTCCTTTCCCACCCAGCTCA
GCACTTCCTTTCCCTAGATGGGAGGGGGTGGCATACAAGCAACTCAAGCC
CCTTGTGAGCCTTCTTTCATAATGTTCCTGGAATGCTCAGCTACCTCCTC
CCCATCCTGGATACTCCAGTGTATATTAATCCAGATGAACGACGGATTAT
AAGACCTTGCCTTCCTTCCTCTTGCTTCATCCTCTGATCCCCAGACTAAG
TTGATAATACCCTTCTGTGCATGGATGGCGCTCTTTTATTCTATTTCTGG
AATAATACCGCTCCTTAATATTTCCCGGTTCTTCCTTACCTCTTGCACCT
CCAAATGTCGGCTTCGGTTTGCTTCTTCCCCCTTTCTGTGGATTCACCGT
ATTATTCGTCTTCTTTTCTCGCACCGTCTTTTTGTATCCCACCCGCTTCC
ACTCTTTATTTTCGCACCTGTGTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_g10.b1 MSMg01no521_g10.b1 CHROMAT_FILE:
MSMg01no521_g10.b1 PHD_FILE: MSMg01no521_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:44 2005
         (457 letters)



>mm_chr14_63825324_63826177
          Length = 854

 Score =  822 bits (425), Expect = 0.0
 Identities = 442/449 (98%), Gaps = 3/449 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   ttttttttttgtccctaagcatagccaccttggtctccatattacccctttcctgatacc 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttttttttttgtccctaagcatagccaccttggtctccatattacccctttcctgatacc 268

                                                                       
Query: 69  aaaggcaatgctgagttcttctccgggaaagccagtggtaccccttaaaagtggacccct 128
           |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaaggcaatgctgagttct---ccgggaaagccagtggtaccccttaaaagtggacccct 325

                                                                       
Query: 129 taaaggtccttccctcctttagccccaggcctggggtttgccagctctgctgttcagtaa 188
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 326 taaaggtccttccctcctttagccccaggtctggggtttgccagctctgctgttcagtaa 385

                                                                       
Query: 189 tccgtactaagagaacgttggctggaaacggatagggcaccctcctcataactctgggta 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tccgtactaagagaacgttggctggaaacggatagggcaccctcctcataactctgggta 445

                                                                       
Query: 249 cataaacagtcatttacacctgcaaacaggtagcagtgtgtctatgccaagcaaacaata 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cataaacagtcatttacacctgcaaacaggtagcagtgtgtctatgccaagcaaacaata 505

                                                                       
Query: 309 tacaggtgcgaggggccgtttgctcaagccagggagttaagtgagcacagaggctatttt 368
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 506 tacaggtgtgaggggccgtttgctcaagccagggagttaagtcagcacagaggctatttt 565

                                                                       
Query: 369 tacacctgtgtcacactgaaggcctttcatcaaggtcacctgcctctagaggtgactctt 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tacacctgtgtcacactgaaggcctttcatcaaggtcacctgcctctagaggtgactctt 625

                                        
Query: 429 gcccatggcctgccctctactgggccacc 457
           ||||||||||||| |||||||||||||||
Sbjct: 626 gcccatggcctgctctctactgggccacc 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 854
Length adjustment: 10
Effective length of query: 447
Effective length of database: 844
Effective search space:   377268
Effective search space used:   377268
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)