BAC Information

Click to search

BAC

Clone NameMSMg01-521H10
Chromosome14 (Build37)
Map Location 123,544,417 - 123,545,049
singlet/doubletsinglet
Overlap genenone
Upstream geneTm9sf2, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneVgcnl1, Itgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521H10.T7 (MSMg01no521_h10.b1)MSMg01-521H10.TJ (MSMg01no521_h10.g1)
ACCAG592253AG592254
length755745
length of high quality
(start - end)
635 (69 - 703)403 (80 - 482)
definitionCHROMAT_FILE: MSMg01no521_h10.b1 PHD_FILE: MSMg01no521_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:48 2005CHROMAT_FILE: MSMg01no521_h10.g1 PHD_FILE: MSMg01no521_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCAGGATTGCTGTTCTTTTGCTGCTCTGAGAAGCAATCATTTT
CACACCCATTATTTCCAGCTTAATTTCAAATGTTTGTTGCTAAGGGAAAT
GGTCTTGGCTTATGCTGGGGAGTCCTATTCCTGAGACCTGAGATGCCTGT
ATTTATAGAATGACTATTCTAGCTTGGACAGACAGTTATTTCTCTCATAT
TGCTGTGCTGAGGACTAAATGAGAAAGAAACCCATGAAAAGTAATGGGTG
ACCACACCACCCATGGCAGCTCATTTCTGCATACACATTTGTTTTCTTTT
ACCTTCAACATAAAAATTCTTTGCAAGTCTCCCTTGGTATTACAGAAAAT
TGCACATCTGATATTTTATGCACCAATCACTCCTGAAGACGCCCCTGCAA
TTTCAATGCTACTGGGAGCAGCTGCTGTCCATATTCTGGGTAAAGGACTA
ATGGAAGATGAGGAATAAATATTACAACAATTACGACTACATGCTCTCAT
TTAAAGCAGCAAAGCCCAAGATTTCTATGGAGATCGGAGTACATCAAACA
GTATTTTTTTATGGCCACATCTAAACTGGACAATAATGGCATATCAATAA
ACTTCAATTACACTCAAGAAAATACCGAAAGTGAGCGTCTGTTGATGCTC
ATTAAAATCCCCCAGCACATTAGAGTTATAGAGAGCAGTGACATCCATCT
GGTAT
NCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTATTGACTGTTATTTTTT
CCTTACAAAACCTTTTTAGTTTCATGAGGTCCCATTTATCAATTGCTGAT
CTTAGAACCTGAAACACTGGAGTTCTGTTTAGGCAATTTCCCCCTGAACC
AGTGAATTCAAGGCTTTTTCCCTCTTTCTCTTCTATTTGATTCAGTGTGT
CTGTTTTTATGTTGAGGTCCTTGATATACTTGGACTTGAGCTTTGTACAA
AGTGGTAAATATGGATCTATTTTTTATTTTTCTACATACAGACTGCCAGT
TAAACCAGCACTATTTATTTAAGATGCTTTCTTTTTTTTTCTGTTGTTTT
TTAAGGATAAAGTAACTTCTGAGTTGCTTACTAGCTCTGACTTTTGCCCC
AGAGAGGAAATGTTTAATTGTAGATTATTCAGGTGAGATGAGACAGGCTT
CATGGTCTCTGCTGGGATCACACTAAGAAAACTCTGGCTTCCGAGAGAAT
CCTAAGTTTTTAATTTTAATTTTTATTCAAGCCACACTGATGGTTTTACA
GTGGAAACAAACAAACAAGGTAAAACATAGATTGTCCTGGCAATAGTATG
TTTCCACAATCTCTTCTTATGTTTTATCAGTGGATGTATTCTAATTCCCA
AATCAGAAAGATTAAACCTATCCCTATATTCCCAATCATTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_h10.b1 MSMg01no521_h10.b1 CHROMAT_FILE:
MSMg01no521_h10.b1 PHD_FILE: MSMg01no521_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:48 2005
         (635 letters)



>mm_chr14_123544217_123545251
          Length = 1035

 Score = 1216 bits (629), Expect = 0.0
 Identities = 632/633 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcttttgctgctctgagaagcaatcattttcacacccattatttccagcttaatttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttcttttgctgctctgagaagcaatcattttcacacccattatttccagcttaatttca 260

                                                                       
Query: 61  aatgtttgttgctaagggaaatggtcttggcttatgctggggagtcctattcctgagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtttgttgctaagggaaatggtcttggcttatgctggggagtcctattcctgagacc 320

                                                                       
Query: 121 tgagatgcctgtatttatagaatgactattctagcttggacagacagttatttctctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagatgcctgtatttatagaatgactattctagcttggacagacagttatttctctcat 380

                                                                       
Query: 181 attgctgtgctgaggactaaatgagaaagaaacccatgaaaagtaatgggtgaccacacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgctgtgctgaggactaaatgagaaagaaacccatgaaaagtaatgggtgaccacacc 440

                                                                       
Query: 241 acccatggcagctcatttctgcatacacatttgttttcttttaccttcaacataaaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acccatggcagctcatttctgcatacacatttgttttcttttaccttcaacataaaaatt 500

                                                                       
Query: 301 ctttgcaagtctcccttggtattacagaaaattgcacatctgatattttatgcaccaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttgcaagtctcccttggtattacagaaaattgcacatctgatattttatgcaccaatc 560

                                                                       
Query: 361 actcctgaagacgcccctgcaatttcaatgctactgggagcagctgctgtccatattctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actcctgaagacgcccctgcaatttcaatgctactgggagcagctgctgtccatattctg 620

                                                                       
Query: 421 ggtaaaggactaatggaagatgaggaataaatattacaacaattacgactacatgctctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtaaaggactaatggaagatgaggaataaatattacaacaattacgactacatgctctc 680

                                                                       
Query: 481 atttaaagcagcaaagcccaagatttctatggagatcggagtacatcaaacagtattttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttaaagcagcaaagcccaagatttctatggagatcggagtacatcaaacagtattttt 740

                                                                       
Query: 541 ttatggccacatctaaactggacaataatggcatatcaataaacttcaattacactcaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 741 ttatggccacatctaaactggacaataatggcatatcaataaacttcaattacactccag 800

                                            
Query: 601 aaaataccgaaagtgagcgtctgttgatgctca 633
           |||||||||||||||||||||||||||||||||
Sbjct: 801 aaaataccgaaagtgagcgtctgttgatgctca 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)