BAC Information

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BAC

Clone NameMSMg01-522D19
Chromosome14 (Build37)
Map Location 97,658,904 - 97,659,534
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522D19.T7 (MSMg01no522_d19.b1)MSMg01-522D19.TJ (MSMg01no522_d19.g1)
ACCAG592844AG592845
length750691
length of high quality
(start - end)
635 (51 - 685)---
definitionCHROMAT_FILE: MSMg01no522_d19.b1 PHD_FILE: MSMg01no522_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:48 2005CHROMAT_FILE: MSMg01no522_d19.g1 PHD_FILE: MSMg01no522_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCTAAGTTTGCATCTATGTAGGTAAATAACACATACCTGT
AATAAATTCCACATTAAATATATTAAATATAATCTTGTATGCACAGAGAG
AGAGAAAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAAAGTCTTAG
ATTGGGAAATCTTTGTCATTCTTCTTACAGAATAATCCTTTATGTTTTCT
AAAGTTGTTCTTAACTGAAGGTTGCTTCAGATTTTAAGGAACAAATTACC
CTGATGTAGAGGTACACATTTAATGACCAAAATTAAGAGACAGACACAAG
TGGATTCTTGTAAGTTTGAGGTATGTTAATCTATATAGTTTGTTCCAGGC
TAACGAAGACTGCATAGAATATGTCTTGGAAAACAAAACAAAACAAAACA
ACCCCAACAACACAACTACCCACCTGTTTTAAGTTTAATTTCTAGAAATA
AATCATGAGTTATGGATTGGGAATATATAATTTGTTTAGAATATGATCTT
TGGATAAATGAGATAAATGCAGAACAGGGGGATCCAAAGGCTGAACACTG
GCACCAACTTGGTCTAGCAAGGACTAGGTATGAACTTCTTCTCAGTTGGC
CTCACCTTGAGACAAGGAGTCCATTCATTTCCATGGTCTTGTTCATCAGA
TATTGCATAAACATTCTAGCTGCCTAGAGGATGAAATTATATTTTTTCAT

GTTTCCTCTGTTAGTGCTTACAGTATGAATTGGTTGTACGAAAANNNNAN
TTTTTTTTTTTNTTTTNCCGCAAAGGAAAAGGGGGGTTAGGCCCGTGGGG
GGGGCCGGCCCGGGGCCCCTTCCAAAAAAATTGGGGGGGGAAAACTTTTA
AAAAAAGGGAATTTCCCCCGAAAAAATCCCCGGGGGAAAAATTTAAAAGG
GGGGGAAAAAGCCCCCCCCCTTTTTTTTTTTTTCCCCCCCTTTTTATATT
GGGGGAGAACCCCCCCAAANGGGGGGGGGTTTAAAAAAAAAAAAAAAAAA
CCACACCCCCCTTTTTGTGGGAAAAAAAAAAAAAAAAAACTCTTTTTAAA
TAAAAAAAGGCCCCCCCCGCAATTATAAAAAATAAAATAAATCACAGCAA
AGGGGGGGGGGGGGGGTGCCTCCCCCCCCCACCCCCACACAAAAAAANNN
ATGAGGAAGGAAAAAAAAAAAAAAATACTAACCCCTCCCCCCCCCCTTTT
TTTTTAAAAAAAAAACAAAAATAACTCTCTTCCCTTNTCTAGGTGTGGGG
GGCGGNCGATAAAAAAAGAAAAAGAATTTAATGATTCCCTTTCCCCACCT
TCCCAAGAAAAAACATACGACAAAAACAACAAGTAGTAAATGGTGGGGGG
GGAAATTAAAAGTTATAAAAAAAAATAAAGAAATAAATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_d19.b1 MSMg01no522_d19.b1 CHROMAT_FILE:
MSMg01no522_d19.b1 PHD_FILE: MSMg01no522_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:48 2005
         (635 letters)



>mm_chr14_97658700_97659734
          Length = 1035

 Score = 1220 bits (631), Expect = 0.0
 Identities = 631/631 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctaagtttgcatctatgtaggtaaataacacatacctgtaataaattccacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctaagtttgcatctatgtaggtaaataacacatacctgtaataaattccacat 264

                                                                       
Query: 65  taaatatattaaatataatcttgtatgcacagagagagagaaagagagagagagagaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaatatattaaatataatcttgtatgcacagagagagagaaagagagagagagagaaag 324

                                                                       
Query: 125 agagagagagagagagaaagtcttagattgggaaatctttgtcattcttcttacagaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagagagagagagagaaagtcttagattgggaaatctttgtcattcttcttacagaata 384

                                                                       
Query: 185 atcctttatgttttctaaagttgttcttaactgaaggttgcttcagattttaaggaacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcctttatgttttctaaagttgttcttaactgaaggttgcttcagattttaaggaacaa 444

                                                                       
Query: 245 attaccctgatgtagaggtacacatttaatgaccaaaattaagagacagacacaagtgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attaccctgatgtagaggtacacatttaatgaccaaaattaagagacagacacaagtgga 504

                                                                       
Query: 305 ttcttgtaagtttgaggtatgttaatctatatagtttgttccaggctaacgaagactgca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcttgtaagtttgaggtatgttaatctatatagtttgttccaggctaacgaagactgca 564

                                                                       
Query: 365 tagaatatgtcttggaaaacaaaacaaaacaaaacaaccccaacaacacaactacccacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagaatatgtcttggaaaacaaaacaaaacaaaacaaccccaacaacacaactacccacc 624

                                                                       
Query: 425 tgttttaagtttaatttctagaaataaatcatgagttatggattgggaatatataatttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgttttaagtttaatttctagaaataaatcatgagttatggattgggaatatataatttg 684

                                                                       
Query: 485 tttagaatatgatctttggataaatgagataaatgcagaacagggggatccaaaggctga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttagaatatgatctttggataaatgagataaatgcagaacagggggatccaaaggctga 744

                                                                       
Query: 545 acactggcaccaacttggtctagcaaggactaggtatgaacttcttctcagttggcctca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acactggcaccaacttggtctagcaaggactaggtatgaacttcttctcagttggcctca 804

                                          
Query: 605 ccttgagacaaggagtccattcatttccatg 635
           |||||||||||||||||||||||||||||||
Sbjct: 805 ccttgagacaaggagtccattcatttccatg 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)