Query= MSMg01no523_m03.b1 MSMg01no523_m03.b1 CHROMAT_FILE:
MSMg01no523_m03.b1 PHD_FILE: MSMg01no523_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:47 2005
(649 letters)
>mm_chr14_102668089_102669137
Length = 1049
Score = 1029 bits (532), Expect = 0.0
Identities = 626/672 (93%), Gaps = 29/672 (4%)
Strand = Plus / Minus
Query: 1 tctagtaccatgtctgcttgaatgttgccatgctccctgccatgatgacagtggactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tctagtaccatgtctgcttgaatgttgccatgctccctgccatgatgacagtggactgaa 772
Query: 61 cctc-aaaaccgtacataagcctcaggtaaatgttctcctttctaagcattgaaatgttc 119
|||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 771 cctctaaaaccgtacataagcctcaggtaaatgttcttctttctaagcattgagatgttc 712
Query: 120 atggtctcttttcacagcaatagaacaatgcctaagaca-taagcaatagaacaattgcc 178
||||||||||||||||||||||||||||||||||||||| || || | | ||||||
Sbjct: 711 atggtctcttttcacagcaatagaacaatgcctaagacagta--cact---tccattgcc 657
Query: 179 atgctcttggaatccattttcttccctcgagcagggccctccagctttatctccagccac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atgctcttggaatccattttcttccctcgagcagggccctccagctttatctccagccac 597
Query: 239 ttagacgcattcagacacattcactggcaatctgacaccatagatctgcatcagggctca 298
||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 596 ttagatgcattcagacacatacactggcaatctgacaccatagatctgcataagggctca 537
Query: 299 taaaattgcaattctaattcttaggttataatactgttgctgaaagtctgatttgactac 358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 taaaattgcaactctaattcttaggttataatactgttgctgaaagtctgatttgactac 477
Query: 359 taccatttatatatgctaccttaatgagatcagaatgagataacaaatggtcataggatg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 taccatttatatatgctaccttaatgagatcagaatgagataacaaatggtcataggatg 417
Query: 419 ccaaaatcatactcaaatcttcctctcatttgtcgcatccattt---------------- 462
||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 416 ccaaaatcaccctcaaatctacccctcatttgtcgcatccattttctacctcttctcgac 357
Query: 463 ----ccccctgtagtaaccattgtg-tccctcatcaattatgaaccctatatgatcattg 517
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 356 ttttccccctgtagtaaccattgtgatcc-tcatcaattatgaaccctatatgatcattg 298
Query: 518 agccttgcttccctttgcttgaaactcatcagaacctttttgctgtaggtggaaatctac 577
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 297 agacttgcttccctttgcttgaaactcatcagaacctttctgctgtaggtggaaatctac 238
Query: 578 ccctctacattctgcaactctgtgattattctcaaaaactatcggctttgcatcttggtg 637
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ccctctacattctgcgactctgtgattattctcaaaaactatcggctttgcatcttggtg 178
Query: 638 aacatgaagctg 649
| ||||||||||
Sbjct: 177 agcatgaagctg 166
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_m03.g1 MSMg01no523_m03.g1 CHROMAT_FILE:
MSMg01no523_m03.g1 PHD_FILE: MSMg01no523_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:47 2005
(662 letters)
>mm_chr14_102500851_102501911
Length = 1061
Score = 1230 bits (636), Expect = 0.0
Identities = 652/662 (98%), Gaps = 9/662 (1%)
Strand = Plus / Plus
Query: 1 accttgcattatgagcaaaatctccacttgaccaaaatgcatcatattttacatatgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accttgcattatgagcaaaatctccacttgaccaaaatgcatcatattttacatatgtgt 260
Query: 61 tgactggatttttaaaggaactagttaaatattgtatatataccatttcctaaggatttc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactggatttttaaaggaactagttaaatattgtatatataccatttcctaaggattt- 319
Query: 121 ttttcttattctttgtttcattttcccttgctatttgtgttcttattttaaattattact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttttcttattctttgtttcattttcccttgctatttgtgttcttattttaaattattact 379
Query: 181 ggttctataaaaggaattgggtgtattactctgttttgagacatagagaattgttcacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggttctataaaaggaattgggtgtattactctgttttgagacatagagaattgttcacca 439
Query: 241 ttatttttcaacataaaaatattactgtaaagggcactgttttggtttcctggattgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttatttttcaacataaaaatattactgtaaagggcactgttttggtttcctggattgctg 499
Query: 301 aatctctctctctctctctctctctctctctctctctctctcatttctctggcaacttga 360
|||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 aatctctctctctctctctctctctctctctctc--------atttctctggcaacttga 551
Query: 361 ggctttaagagaaattaagcacaccttttgtgatatagtttgctcataattgcttctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggctttaagagaaattaagcacaccttttgtgatatagtttgctcataattgcttctttt 611
Query: 421 tgttcttctaacttggtattgttttattcctgagctccattgaagtatatttaacaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgttcttctaacttggtattgttttattcctgagctccattgaagtatatttaacaaata 671
Query: 481 gaaatcacatgcacctaatatctacaaaatgtgtttatttgatatagaatacattatgac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gaaatcacatgcacctaatatctacaaaatgtgtttatttgatatagaatacattatgac 731
Query: 541 atgattaccacaataaaattaaccaacataccaaggaccacacactattgtctttaatgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 atgattaccacaataaaattaaccaacataccaaggaccacacactattgtctttaatgt 791
Query: 601 ttttacttgtatagtaaaactaccttttcagtaattatatacactcagacagaatatatg 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 792 ttttacttgtatagtaaaactaccttttcagtaattatatacacacagacagaatatatg 851
Query: 661 ta 662
||
Sbjct: 852 ta 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space: 685252
Effective search space used: 685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
