BAC Information

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BAC

Clone NameMSMg01-524M02
Chromosome14 (Build37)
Map Location 81,411,049 - 81,411,708
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524M02.T7 (MSMg01no524_m02.b1)MSMg01-524M02.TJ (MSMg01no524_m02.g1)
ACCAG594757AG594758
length758756
length of high quality
(start - end)
702 (36 - 737)659 (65 - 723)
definitionCHROMAT_FILE: MSMg01no524_m02.b1 PHD_FILE: MSMg01no524_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:07 2005CHROMAT_FILE: MSMg01no524_m02.g1 PHD_FILE: MSMg01no524_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGAGGAATACCGAATGGCTGAGAAGCATCTGAAAAAATGTTCAACATCCT
TAATCATCAGGGGAATGCAAATCAAAACAACACTGAGATTCCACCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC
TTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCGTAAGAAAATTGGAC
ATAGTACTACTGGAGGATCCCACAATACCTCTCCTGGGCATATATCCAGA
AGATATTCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CCTTGTTTATAATAACCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTC
AGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGAGGGACC
TGGAGGGCCAGAGTGAGGTAACCCAATCACAAAAGAACTCACATGATATG
TACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATA
TAAGATACAATTTGCAAAACACATGANACTCAAGAAGAATGAAGACCAAA
GTGTGGACATTTTGCCCCTTCTTAGATATGGGAACAAAATACCCATGAAA
GGGAGTAC
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTAATGCATAAACACGCTGAATGATGAAAATAACCA
CAAAGCTGTGGGTATAAGTAAACTGTCAGGATAATTATGAGTGAAAATAA
AGAGATTCTCCTTAACACAATGTTCTAATTTAATTTTAGCTTAAATTAAT
TTTTAAATTTTTAATTTGGAAGAAAAATCTATTATTCCCTCCATTTCTTT
TGTAGTTTTAAATACTTGCTCTGTAAACGGGCTCAGATATCTTTTTCAAG
ATTTTGAAAAATTGCTGGAGGTGATCCTTCTCTATTTTTTCCTTGCTGCT
CTATCAGCTATTGGTTTATTACGCTGTCACTTTGTTAAGTACCATTACTT
GACTTTTATTAAACATAAACAACGAATCAGGTGTTGACAAACTATATTAA
TTTTTCTGCAGGCATCTTAGTCGTCTTCCCTTTTTTGTATGTGATCCAAT
TTCCAGGTCTTCATCTCTTAAATGGCAATCACCCTAATATTTCTGTTTCT
ACTTTATATTCCAGTTGTCACAACAAAGTTTCCAATTAAAATATATGAAC
ATACAATAAAACAACTTTTTCATTTCTGGGTCCATGAGTGAAAAAAAGAA
CAATTAGAAAGTTTTGAAGGTTGAATTTTATTCACTTAGCACTCTATTGA
TATTTCAAATGGCAATTCTCTCCTAGAATGAAACAATGTGATGGTTATCC
AAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_m02.g1 MSMg01no524_m02.g1 CHROMAT_FILE:
MSMg01no524_m02.g1 PHD_FILE: MSMg01no524_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:07 2005
         (659 letters)



>mm_chr14_81410696_81411755
          Length = 1060

 Score = 1245 bits (644), Expect = 0.0
 Identities = 656/660 (99%), Gaps = 1/660 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttaatgcataaacacgctgaatgatgaaaataaccacaaagctgtgggtataagtaaact 60
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 ttaatgcataaacacactgaatgatgaaaataaccacaaagctgtgggtataagtaaact 954

                                                                        
Query: 61   gtcaggataattatgagtgaaaataaagagattctccttaacacaatgttctaatttaat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  gtcaggataattatgagtgaaaataaagagattctccttaacacaatgttctaatttaat 894

                                                                        
Query: 121  tttagcttaaattaatttttaaatttttaatttggaagaaaaatctattattccctccat 180
            |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  tttagcttaacttactttttaaatttttaatttggaagaaaaatctattattccctccat 834

                                                                        
Query: 181  ttcttttgtagttttaaatacttgctctgtaaacgggctcagatatctttttcaagattt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  ttcttttgtagttttaaatacttgctctgtaaacgggctcagatatctttttcaagattt 774

                                                                        
Query: 241  tgaaaaattgctggaggtgatccttctcta-ttttttccttgctgctctatcagctattg 299
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 773  tgaaaaattgctggaggtgatccttctctatttttttccttgctgctctatcagctattg 714

                                                                        
Query: 300  gtttattacgctgtcactttgttaagtaccattacttgacttttattaaacataaacaac 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713  gtttattacgctgtcactttgttaagtaccattacttgacttttattaaacataaacaac 654

                                                                        
Query: 360  gaatcaggtgttgacaaactatattaatttttctgcaggcatcttagtcgtcttcccttt 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653  gaatcaggtgttgacaaactatattaatttttctgcaggcatcttagtcgtcttcccttt 594

                                                                        
Query: 420  tttgtatgtgatccaatttccaggtcttcatctcttaaatggcaatcaccctaatatttc 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593  tttgtatgtgatccaatttccaggtcttcatctcttaaatggcaatcaccctaatatttc 534

                                                                        
Query: 480  tgtttctactttatattccagttgtcacaacaaagtttccaattaaaatatatgaacata 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533  tgtttctactttatattccagttgtcacaacaaagtttccaattaaaatatatgaacata 474

                                                                        
Query: 540  caataaaacaactttttcatttctgggtccatgagtgaaaaaaagaacaattagaaagtt 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473  caataaaacaactttttcatttctgggtccatgagtgaaaaaaagaacaattagaaagtt 414

                                                                        
Query: 600  ttgaaggttgaattttattcacttagcactctattgatatttcaaatggcaattctctcc 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413  ttgaaggttgaattttattcacttagcactctattgatatttcaaatggcaattctctcc 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space:   681450
Effective search space used:   681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)