BAC Information

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BAC

Clone NameMSMg01-525G01
Chromosome14 (Build37)
Map Location 113,133,494 - 113,134,165
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525G01.T7 (MSMg01no525_g01.b1)MSMg01-525G01.TJ (MSMg01no525_g01.g1)
ACCAG595229AG595230
length747740
length of high quality
(start - end)
680 (36 - 715)673 (68 - 740)
definitionCHROMAT_FILE: MSMg01no525_g01.b1 PHD_FILE: MSMg01no525_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:58 2005CHROMAT_FILE: MSMg01no525_g01.g1 PHD_FILE: MSMg01no525_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGTGCAATAACAAATGGCTCTGAAGCACCTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATTAAAACAACCTTGAGATTCCACCTCACA
CCAGTAAGAATTACTAAGATCAAAAATTCAGGTGACAGCACATGCTGGCG
AGGATGTGGAGAAAGAGGCACACTACTCCACTGCTCGTGGGATTACAAGT
TTTTAAAACCATTCTGGAACTCAGTCTGGATATTCCTCAGAAAATTGGAC
ATAATACTACCAGAAGATCCAGCAATACCTCTCCTGGGCATATACCCAGA
AGAAGTTCCAACTGGTATTAAGAACACATGCTCCACTATGTTCATAGCAG
CCTTATTTATAATAGACAGAAGCTGGAAAGAACCCAGATGTCCCTCAACA
GAAGAATGGATAGAGAAAGTGAGATATATTTACACAATGGAGTACTACTC
AGCTATTAAAAACAATGGATTTATGAAATTCTTTGGCAAATGGATGTATC
TAGAGGATATCATTCTTAGTGAGGTAACCCAATCACAAAAGAAGTCATTA
GATATGCACTCACTGATAAGTGGATATTAGCCCAGAAAGATAGAACACCC
AAGATCCAATTTGCAAAACACAAGAAAATCAAGAAGAGGGAAGACCAATA
GGTGGATACTTCATTCCTCCTTAGAATAGGGAACAAAATACCCATGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCTGTAGACCAAGCAGGCCTTGAACTCAGAA
ATCTGCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACC
ATGCCTGACAAAATTGTCATTTTTAATTTTAAAAAATTCATTAAACTTTT
ATTTATCTTGAATTTACAGATTTTTGAATGTTTGGGCATTTATTCTTAAT
TTCAAAAATGTGTTCCTTAATTTTGAAAAACTTTTTTTTTAACTCCATCT
ACAACAGAGGCATTATCTGACCTGATAATAAAGTGATTATTCTAACTCAA
AATTCCTTTTACTGTTCACCGTATCAAATAGAAATCACTGTGGGTTATTA
ACTGCTTATTTATAAAAAACAACAGAGAAGAAATTACAATTTGCTACCTT
GTTTTATCACTAGTTTAGTAAATTATCAAAATAATGAATAATAATGTATG
GTTGTCATGAACTTGCATTATCCAGAGCACCATTTTCAAAACTCATAACA
TGTAGCAAGGGTTATTTACAATGGCCTGAGGGCAATGTAGTGAAGCTCTA
TCAGTGAGAAATGATTTGCTGTGGGTTGTTATGCTATTTGAAAGTGTTCT
TAGAAGAGGTAGGAACACATTCTAAAACATAATGTCATCTACAAGAAATG
GCTTTTTCTGACAATGTGTTTCATAATGACATCACATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_g01.g1 MSMg01no525_g01.g1 CHROMAT_FILE:
MSMg01no525_g01.g1 PHD_FILE: MSMg01no525_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:58 2005
         (673 letters)



>mm_chr14_113133155_113134226
          Length = 1072

 Score = 1224 bits (633), Expect = 0.0
 Identities = 663/673 (98%), Gaps = 1/673 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    actctgtagaccaagcaggccttgaactcagaaatctgcctgcttctgcctcccaagtgc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 actctgtagaccaagcaggccttgaactcagaaatctgcctgcttctgcctcccaagtgc 952

                                                                        
Query: 61   tgggattaaaggcatgtgccaccatgcctgacaaaattgtcatttttaattttaaaaaat 120
            |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 951  tgggattaaatgcatgtgccaccacgcctggcaaaattgtcatttttaattttaaaaaat 892

                                                                        
Query: 121  tcattaaacttttatttatcttgaatttacagatttttgaatgtttgggcatttattctt 180
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 891  tcattaaacttttatttatcttgaatttacagatttttgaatgtttaggcatttattctt 832

                                                                        
Query: 181  aatttcaaaaatgtgttccttaattttgaaaaactttttttttaactccatctacaacag 240
            ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 831  aatttcaaatatgtgttccttaattttgaaaaac-ttttttttaactccatctacaacag 773

                                                                        
Query: 241  aggcattatctgacctgataataaagtgattattctaactcaaaattccttttactgttc 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 772  aggcattatctgacctgataataaagtgattattctaactcaaaattccttttactattc 713

                                                                        
Query: 301  accgtatcaaatagaaatcactgtgggttattaactgcttatttataaaaaacaacagag 360
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712  accatatcaaatagaaatcactgtgggttattaactgcttatttataaaaaacaacagag 653

                                                                        
Query: 361  aagaaattacaatttgctaccttgttttatcactagtttagtaaattatcaaaataatga 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652  aagaaattacaatttgctaccttgttttatcactagtttagtaaattatcaaaataatga 593

                                                                        
Query: 421  ataataatgtatggttgtcatgaacttgcattatccagagcaccattttcaaaactcata 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592  ataataatgtatggttgtcatgaacttgcattatccagagcaccattttcaaaactcata 533

                                                                        
Query: 481  acatgtagcaagggttatttacaatggcctgagggcaatgtagtgaagctctatcagtga 540
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 532  acatgtagcaagggttatttacaatggcctgagggcaatgtattgaagctctatcagtga 473

                                                                        
Query: 541  gaaatgatttgctgtgggttgttatgctatttgaaagtgttcttagaagaggtaggaaca 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472  gaaatgatttgctgtgggttgttatgctatttgaaagtgttcttagaagaggtaggaaca 413

                                                                        
Query: 601  cattctaaaacataatgtcatctacaagaaatggctttttctgacaatgtgtttcataat 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412  cattctaaaacataatgtcatctacaagaaatggctttttctgacaatgtgtttcataat 353

                         
Query: 661  gacatcacattat 673
            | |||||||||||
Sbjct: 352  gccatcacattat 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1072
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1062
Effective search space:   704106
Effective search space used:   704106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)