BAC Information

Click to search

BAC

Clone NameMSMg01-526B21
Chromosome14 (Build37)
Map Location 22,859,041 - 22,859,575
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneAp3m1, Adk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075
Downstream geneEG435392, LOC665068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526B21.T7 (MSMg01no526_b21.b1)MSMg01-526B21.TJ (MSMg01no526_b21.g1)
ACCAG595789AG595790
length741661
length of high quality
(start - end)
539 (41 - 579)---
definitionCHROMAT_FILE: MSMg01no526_b21.b1 PHD_FILE: MSMg01no526_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:56 2005CHROMAT_FILE: MSMg01no526_b21.g1 PHD_FILE: MSMg01no526_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGGATAATGGTTGGCTATTTCCACTTGCAGTGGGCTGACAGCTGGCTTTC
TGTGATGTTGATCCAGCTCAGGTATTTGAGAAGAATTCACAAAAGTGCAC
CAGCTTAGGACCTTCTCCTGCTCAACTGTCAGCACGGAGGCAGACATCTG
CCTCCCACACTCCTTCCCCAGTCTTAGGCCATCATCTGCTCTTAGGAGGC
AAGCTGATGCATTTAGAGGGGACGATCAAGATATCCTGAAAGATATACCA
CTGAAACAAAGCAAGCATGCCACCAAGCAATTCTAACATACTCCCCTCAA
AGACTATGCCAGTGGGCAGGTGCATACCCACACAGCTTCTCAGAAGGCAA
GAGAGAGAAAGCTTTCATCCTGCCACTCCCTTGCCCTCCTTGCCACCAAC
CCCACAGACACATTCTGTACCGATCCAGCCACAGAGCCCATCAAATAACA
AAAGGAAGAAGGAAAATCAAACCAAAAAACAACAAAAAATTAGGACTTCC
AAAGAGCAAAACTTTCACAAATCCAGTGCTTTAGCCTCAGAGATGTCGTA
TGTGGAAGAGAAACAGAATAGGGTCTTGGGGGTATGGAACTTTTGCACAC
CGTGTTTTATTTTAAAAGAATGCAAAAAAAATCCCTTGTGCTATTATTTC
TTTAGCAAACGGAGAGCAAACAAAGCTAGCTCTAATTAGCN
NNNNNNNNNNNNNNNNNNNNNNNNCCCATATATGGGTAGGTGTGGGGGCC
CGGGGTTCCCCATTTGTGGACACTAAAAAGGATTTCCGAATCTCTTTTGG
ATACCCCCTTGTTGAGAAATGGAGAAGATATTTCTCTTAAGAATGCGTGG
CTTATCTCCCCTAAGAAGGCTCTGCGTTCTCCACCACCGGCACCAACCAA
GCCAAGCGGCCGAAGGTCTCTCCTCCTCGCCTTTTTCCTTTTGGGCCTGG
GGCAACAGCCCAGGNNCTACGTTCTCAGCTCTTCCGCAGCATCCAGTGGG
TATTTGCGGTGCCTAAGACCTTGTGGATTCGTGGTGGCCCAAGGACCCTT
GAGACCCACTTTTTACAGGTAGTTCCCTTGGGGAACCCAAACTGGGCTTT
CCCCCCCACTGGGAGGGGGGGTCCTGGGGGTTTAAAACCCCCACCCGGGG
GGCATGGGGTTATTGGAAAAAAAGTTTCCTTGGGGTTTTGGCCCCACTAA
AACCCACTGGGGGGCCCTTAACCCTGTGGGAAAAACCGAAGGGGGAAAAA
CTTTTTTTTAACCCCCCTGCGGGGAAAAAGGGTGGGGGCCCCCCTCCCCG
GGGAAAGAGGGGGTGTTGGGGGTCTTAAAAAAAAAAAAAAAAAAGGGGTG
TTTTTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_b21.b1 MSMg01no526_b21.b1 CHROMAT_FILE:
MSMg01no526_b21.b1 PHD_FILE: MSMg01no526_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:56 2005
         (539 letters)



>mm_chr14_22858837_22859775
          Length = 939

 Score = 1035 bits (535), Expect = 0.0
 Identities = 535/535 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggataatggttggctatttccacttgcagtgggctgacagctggctttctgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaattcaggataatggttggctatttccacttgcagtgggctgacagctggctttctgtg 680

                                                                       
Query: 65  atgttgatccagctcaggtatttgagaagaattcacaaaagtgcaccagcttaggacctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atgttgatccagctcaggtatttgagaagaattcacaaaagtgcaccagcttaggacctt 620

                                                                       
Query: 125 ctcctgctcaactgtcagcacggaggcagacatctgcctcccacactccttccccagtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctcctgctcaactgtcagcacggaggcagacatctgcctcccacactccttccccagtct 560

                                                                       
Query: 185 taggccatcatctgctcttaggaggcaagctgatgcatttagaggggacgatcaagatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taggccatcatctgctcttaggaggcaagctgatgcatttagaggggacgatcaagatat 500

                                                                       
Query: 245 cctgaaagatataccactgaaacaaagcaagcatgccaccaagcaattctaacatactcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cctgaaagatataccactgaaacaaagcaagcatgccaccaagcaattctaacatactcc 440

                                                                       
Query: 305 cctcaaagactatgccagtgggcaggtgcatacccacacagcttctcagaaggcaagaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cctcaaagactatgccagtgggcaggtgcatacccacacagcttctcagaaggcaagaga 380

                                                                       
Query: 365 gagaaagctttcatcctgccactcccttgccctccttgccaccaaccccacagacacatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagaaagctttcatcctgccactcccttgccctccttgccaccaaccccacagacacatt 320

                                                                       
Query: 425 ctgtaccgatccagccacagagcccatcaaataacaaaaggaagaaggaaaatcaaacca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctgtaccgatccagccacagagcccatcaaataacaaaaggaagaaggaaaatcaaacca 260

                                                                  
Query: 485 aaaaacaacaaaaaattaggacttccaaagagcaaaactttcacaaatccagtgc 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaaaacaacaaaaaattaggacttccaaagagcaaaactttcacaaatccagtgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)