BAC Information

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BAC

Clone NameMSMg01-526C16
Chromosome14 (Build37)
Map Location 81,978,030 - 81,978,702
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526C16.T7 (MSMg01no526_c16.b1)MSMg01-526C16.TJ (MSMg01no526_c16.g1)
ACCAG595826AG595827
length718721
length of high quality
(start - end)
677 (38 - 714)653 (69 - 721)
definitionCHROMAT_FILE: MSMg01no526_c16.b1 PHD_FILE: MSMg01no526_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:00 2005CHROMAT_FILE: MSMg01no526_c16.g1 PHD_FILE: MSMg01no526_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
ATGTGTACTGCGCGATGAATTTAATTTAAATTTTTCTATCCCCACTTTTG
CCTTCTGTCACCACTGGGAGAAATTGAACCACTTGACTGCTGCTGTGGCA
AATTGGATCCTAATAAGGATGATGCTTTAGTACTTCTTGTTTTTGCTAAG
ATACAACTGCAGTATTTGAGAAGAACTCACCTGGGTATTAATTCAACAAG
AGATGCTGGTAGGAACATTATATTTTCCACGTTCTGCTATCTCAGTGAAT
GTGCTGCATATAAAGAGGATCAGCAGATGGACTGTTTAACTCACTGATGT
GCTTGTCATTCCAACACTAGGTGAGGCTGACTAATCTCGATGCACTTAGA
AATGATAATCTCAGTGTTTCAAATTGGTATTATTCAAAATAATATGCCTT
TCCCTGTATAACTAATGCATGTGCTTCAATATGAAGTGTCCATGTCAGAT
GCTATCCTGAAAAAAATGCCAACATTTTGAGTCCTTATAGAACTTGTTTA
AATAATTGCTGAGAAATCAACATATAAAATATAAATAAATAAAATGGTGG
CATAATCAATTAACCCAGTTTTAAGTTAAATATAAAAGTTTCTGAAACAC
ATTTTCTTAACTATTATACAAATGGAAAGATTTTAAAAGCATATGTGGTA
CAGTCTGTCTCTGGTTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGATGAGGATTACATTGAATCTGCAGTTTTCT
TTCTTTAAAATGGCCATTTCTACCATGTTAAACCTACCAATGCATGAGCA
CGGAAGATCTTTCCATTATCTGAGGTCTTCTTTGATTTCTTTCTTCAGAG
ACTTGAAGTTCTTGTCATGCAGATCTTTCACTTAATTGGTTAGAGTTACA
TCAAGATATTTTATATTATTTGTGACTATTGAGAAGGTTGTTGTTCCCTA
TTTTCTTTCTCAGCCCATTTATCCTTGTGTAGAGGAAAGTTACTGATTAG
TTTGAGTTAATTTTATATCCAGAAACTTAATTGAAGTTGTTTACCAAGTG
TTTGAGTTCCCTGGTAGAATCTTAAGGATTACTTATACATACAATCACGT
ATGCATAGTGATACTTGACTTCTTCCTTTCCTATGTGTATACCTTTGACC
TTATTTGGTTGCCTAACTTTGAGTTGTAAAACTTCTAAAACTATATTGAG
TAAGTAAGTAGATAGTGGGAACCCTTGCCTTGTCCCTGATTTTAGTGGGA
TTGCTTCAAGTTTCTCTCCATTTAATTTCATATTGGCTGTTTGTTTGCTA
TATATATTGTTTTTATTATGTTTAGATATGAGCCTTCAATTCCTGTTGTT
TCCAAGAATTTTAACATGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_c16.b1 MSMg01no526_c16.b1 CHROMAT_FILE:
MSMg01no526_c16.b1 PHD_FILE: MSMg01no526_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:00 2005
         (677 letters)



>mm_chr14_81977969_81979045
          Length = 1077

 Score = 1263 bits (653), Expect = 0.0
 Identities = 668/673 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacatgtgtactgcgcgatgaatttaatttaaatttttctatccccacttttgc 64
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 734 gaattccacatgtgtactgcgcgatgaatttaatttaaaattttctatccccacttttgc 675

                                                                       
Query: 65  cttctgtcaccactgggagaaattgaaccacttgactgctgctgtggcaaattggatcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cttctgtcaccactgggagaaattgaaccacttgactgctgctgtggcaaattggatcct 615

                                                                       
Query: 125 aataaggatgatgctttagtacttcttgtttttgctaagatacaactgcagtatttgaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aataaggatgatgctttagtacttcttgtttttgctaagatacaactgcagtatttgaga 555

                                                                       
Query: 185 agaactcacctgggtattaattcaacaagagatgctggtaggaacattatattttccacg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agaactcacctgggtattaattcaacaagagatgctggtaggaacattatattttccacg 495

                                                                       
Query: 245 ttctgctatctcagtgaatgtgctgcatataaagaggatcagcagatggactgtttaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttctgctatctcagtgaatgtgctgcatataaagaggatcagcagatggactgtttaact 435

                                                                       
Query: 305 cactgatgtgcttgtcattccaacactaggtgaggctgactaatctcgatgcacttagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cactgatgtgcttgtcattccaacactaggtgaggctgactaatctcgatgcacttagaa 375

                                                                       
Query: 365 atgataatctcagtgtttcaaattggtattattcaaaataatatgcctttccctgtataa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atgataatctcagtgtttcaaattggtattattcaaaataatatgcctttccctgtataa 315

                                                                       
Query: 425 ctaatgcatgtgcttcaatatgaagtgtccatgtcagatgctatcctgaaaaaaatgcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctaatgcatgtgcttcaatatgaagtgtccatgtcagatgctatcctgaaaaaaatgcca 255

                                                                       
Query: 485 acattttgagtccttatagaacttgtttaaataattgctgagaaatcaacatataaaata 544
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 254 acattttgattccttatagaacttgtttaaataattgctaagaaatcaacatataaaata 195

                                                                       
Query: 545 taaataaataaaatggtggcataatcaattaacccagttttaagttaaatataaaagttt 604
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 194 taaataaataaaacggtggcataatcaattaacccaattttaagttaaatataaaagttt 135

                                                                       
Query: 605 ctgaaacacattttcttaactattatacaaatggaaagattttaaaagcatatgtggtac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ctgaaacacattttcttaactattatacaaatggaaagattttaaaagcatatgtggtac 75

                        
Query: 665 agtctgtctctgg 677
           |||||||||||||
Sbjct: 74  agtctgtctctgg 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)