BAC Information

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BAC

Clone NameMSMg01-528L10
Chromosome14 (Build37)
Map Location 98,316,553 - 98,462,582
singlet/doubletdoublet
Overlap geneDach1
Upstream geneLOC668654, EG668659
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528L10.T7 (MSMg01no528_l10.b1)MSMg01-528L10.TJ (MSMg01no528_l10.g1)
ACCAG597765AG597766
length748741
length of high quality
(start - end)		697 (52 - 748)660 (82 - 741)
definitionCHROMAT_FILE: MSMg01no528_l10.b1 PHD_FILE: MSMg01no528_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:23 2005CHROMAT_FILE: MSMg01no528_l10.g1 PHD_FILE: MSMg01no528_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,461,891 - 98,462,582)(98,316,553 - 98,317,212)
sequence
NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGGTATGGCATTTCAGCAAGGTAAAGCTACACTTTGTCA
GCTGCGGTTTGGGAATACATGAGTAATGAAATGCAGGGTAGCAGTGTATG
AATGGACATTGTATAGCAGTGTATGAAAGACATGCTAACTCATGGCCAGG
ATGCTTGCATCATTAGACGACACATTTGTTATGGAATGGGAACCAAGTAA
GAGGAAGGGTGAAGGAAGAGAGTATAGGAAAGAATACAGTATAAAGGCTG
TGTCAGAAGCCAGAAGCTCAGTAGTCCCACTCCCTAGCATTGTTCATAGC
ACAGAGTGAATCTGGGTGTAGATCCTCAAAAGCATAAATCTTTGCAACGT
GGAAAAGTGGTTGTCACAAAACTGCAGGGAAATGAAAGCTGCTTATTTTA
TTTTTCCATTGTCCAATTTCATAAACCACTAGCCCCGTTTCCTTCATTAC
TCCTCTTCCAACACTCATGCTTATTTAGGTCTAACTTTGCTCTCTCAAGA
TGATTTTTTTTTCATTTTGGTTCATTTGTTCTTTTTAATGATGGTAATAC
TGTCTAGGGTGTTGAGTTCTGAGGAGGGAAGGAAATGGCATTTATGGGAC
TTCTGTTTCTTATTCAGGCTTACAAAATGGTATACTGTCTAAGAGTCTTC
TACTCCTCACTCTTATAGCAAGACACTGCCCCAGTGTGTCTGCTCTGN

TTTTCTCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTAAAATAGATAATAC
TCTCATAAACATGGAAACCACAGCGTTGGTAAAATTCCCACTTAATGCTT
TAGCTCCACTAAAAGCCATGTTGTAAAGTCTCTATGACATAGTTTTCAGT
GAAGACTGCTTAGTTACTGCCATGATATTTTTCCCTTTACTTCGTGAAGA
CAGTTAAGGTTCAATATAAATTCAAACTCATTAGCTCAATACTGTCTGGA
TCTCAGAGTAAATTGTTCAGAAGTGGGTAATGAAAACTCAATTCGAATTC
TTCAGCAATCAAACAAAGCGATTTTATTAAACAATGAAAAGAATCAATTA
AGTGAATATCTTTATTATCTTTATTATTTTACAAGGAACTATGACAGCTT
TTAGTTTAAAAACGTTTATAACTTTATACAGAAATGACTCACATAAAAGA
TATTTCATCAACCTGCTCCCTAACTTCAATGCAAAAGTTCATTTTCGTAT
TCAATAATTTTATATACCTTACCCCTCTACATTTGACTTTTTGACACATA
TTCCAGTCAAATGTGAGATAACTGTATAAATGTGAATTTCTCAAATGCAT
CCTGTCAAGAGACTACTAGAATAAAACTCTTCAAATAACCTCACTTTGCT
TCATTTTATCAAACTACCTGCAAACACATTACATATTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_l10.b1 MSMg01no528_l10.b1 CHROMAT_FILE:
MSMg01no528_l10.b1 PHD_FILE: MSMg01no528_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:23 2005
         (697 letters)



>mm_chr14_98461687_98462783
          Length = 1097

 Score = 1338 bits (692), Expect = 0.0
 Identities = 692/692 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggtatggcatttcagcaaggtaaagctacactttgtcagctgcggtttgggaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gaattcaggtatggcatttcagcaaggtaaagctacactttgtcagctgcggtttgggaa 837

                                                                       
Query: 65  tacatgagtaatgaaatgcagggtagcagtgtatgaatggacattgtatagcagtgtatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tacatgagtaatgaaatgcagggtagcagtgtatgaatggacattgtatagcagtgtatg 777

                                                                       
Query: 125 aaagacatgctaactcatggccaggatgcttgcatcattagacgacacatttgttatgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 aaagacatgctaactcatggccaggatgcttgcatcattagacgacacatttgttatgga 717

                                                                       
Query: 185 atgggaaccaagtaagaggaagggtgaaggaagagagtataggaaagaatacagtataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 atgggaaccaagtaagaggaagggtgaaggaagagagtataggaaagaatacagtataaa 657

                                                                       
Query: 245 ggctgtgtcagaagccagaagctcagtagtcccactccctagcattgttcatagcacaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ggctgtgtcagaagccagaagctcagtagtcccactccctagcattgttcatagcacaga 597

                                                                       
Query: 305 gtgaatctgggtgtagatcctcaaaagcataaatctttgcaacgtggaaaagtggttgtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gtgaatctgggtgtagatcctcaaaagcataaatctttgcaacgtggaaaagtggttgtc 537

                                                                       
Query: 365 acaaaactgcagggaaatgaaagctgcttattttatttttccattgtccaatttcataaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 acaaaactgcagggaaatgaaagctgcttattttatttttccattgtccaatttcataaa 477

                                                                       
Query: 425 ccactagccccgtttccttcattactcctcttccaacactcatgcttatttaggtctaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ccactagccccgtttccttcattactcctcttccaacactcatgcttatttaggtctaac 417

                                                                       
Query: 485 tttgctctctcaagatgatttttttttcattttggttcatttgttctttttaatgatggt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tttgctctctcaagatgatttttttttcattttggttcatttgttctttttaatgatggt 357

                                                                       
Query: 545 aatactgtctagggtgttgagttctgaggagggaaggaaatggcatttatgggacttctg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aatactgtctagggtgttgagttctgaggagggaaggaaatggcatttatgggacttctg 297

                                                                       
Query: 605 tttcttattcaggcttacaaaatggtatactgtctaagagtcttctactcctcactctta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tttcttattcaggcttacaaaatggtatactgtctaagagtcttctactcctcactctta 237

                                           
Query: 665 tagcaagacactgccccagtgtgtctgctctg 696
           ||||||||||||||||||||||||||||||||
Sbjct: 236 tagcaagacactgccccagtgtgtctgctctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_l10.g1 MSMg01no528_l10.g1 CHROMAT_FILE:
MSMg01no528_l10.g1 PHD_FILE: MSMg01no528_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:23 2005
         (660 letters)



>mm_chr14_98316353_98317412
          Length = 1060

 Score = 1276 bits (660), Expect = 0.0
 Identities = 660/660 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttaaaatagataatactctcataaacatggaaaccacagcgttggtaaaattcccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttaaaatagataatactctcataaacatggaaaccacagcgttggtaaaattcccac 260

                                                                       
Query: 61  ttaatgctttagctccactaaaagccatgttgtaaagtctctatgacatagttttcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatgctttagctccactaaaagccatgttgtaaagtctctatgacatagttttcagtg 320

                                                                       
Query: 121 aagactgcttagttactgccatgatatttttccctttacttcgtgaagacagttaaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagactgcttagttactgccatgatatttttccctttacttcgtgaagacagttaaggtt 380

                                                                       
Query: 181 caatataaattcaaactcattagctcaatactgtctggatctcagagtaaattgttcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatataaattcaaactcattagctcaatactgtctggatctcagagtaaattgttcaga 440

                                                                       
Query: 241 agtgggtaatgaaaactcaattcgaattcttcagcaatcaaacaaagcgattttattaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgggtaatgaaaactcaattcgaattcttcagcaatcaaacaaagcgattttattaaa 500

                                                                       
Query: 301 caatgaaaagaatcaattaagtgaatatctttattatctttattattttacaaggaacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatgaaaagaatcaattaagtgaatatctttattatctttattattttacaaggaacta 560

                                                                       
Query: 361 tgacagcttttagtttaaaaacgtttataactttatacagaaatgactcacataaaagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacagcttttagtttaaaaacgtttataactttatacagaaatgactcacataaaagat 620

                                                                       
Query: 421 atttcatcaacctgctccctaacttcaatgcaaaagttcattttcgtattcaataatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttcatcaacctgctccctaacttcaatgcaaaagttcattttcgtattcaataatttt 680

                                                                       
Query: 481 atataccttacccctctacatttgactttttgacacatattccagtcaaatgtgagataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atataccttacccctctacatttgactttttgacacatattccagtcaaatgtgagataa 740

                                                                       
Query: 541 ctgtataaatgtgaatttctcaaatgcatcctgtcaagagactactagaataaaactctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtataaatgtgaatttctcaaatgcatcctgtcaagagactactagaataaaactctt 800

                                                                       
Query: 601 caaataacctcactttgcttcattttatcaaactacctgcaaacacattacatatttaac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caaataacctcactttgcttcattttatcaaactacctgcaaacacattacatatttaac 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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