Query= MSMg01no528_m04.b1 MSMg01no528_m04.b1 CHROMAT_FILE:
MSMg01no528_m04.b1 PHD_FILE: MSMg01no528_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:27 2005
(672 letters)
>mm_chr14_37432124_37433195
Length = 1072
Score = 1245 bits (644), Expect = 0.0
Identities = 662/674 (98%), Gaps = 10/674 (1%)
Strand = Plus / Plus
Query: 9 gaattccctaggtctacctctctgaagttacagaaaatgtattctaaacaataaaaatag 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattccctaggtctacctctctgaagttacagaaaatgtattctaaacaataaaaatag 258
Query: 69 ttacatttgaacatgcatcaaactggtgtgagcatgcaggagggagctctgacttctagc 128
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttacatttgaacatgcatcaaaccggtgtgagcatgcaggagggagctctgacttctagc 318
Query: 129 ttctagacactccactcctgcaatggccctgaactggcaatctgcactcctgtcctagcc 188
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttctagacactcccctcctgcaatggccctgaactggcaatctgcactcctgtcctagcc 378
Query: 189 taagaaacccagacaagttcctgctgcaaagctgattggcctctcctggtctggcaaaag 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taagaaacccagacaagttcctgctgcaaagctgattggcctctcctggtctggcaaaag 438
Query: 249 gagaagaataaaaacattaagaagcacttgaacaaatttacaaagtacaatataaataga 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gagaagaataaaaacattaagaagcacttgaacaaatttacaaagtacaatataaataga 498
Query: 309 ctcaatgaacaagccaatgaggaaaatttgaaagtagagcagaatttatcatcaaaattc 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctcaatgaacaagccaatgaggaaaatttgaaagtagagcagaatttatcatcaaaattc 558
Query: 369 catattttggggtaacaacatttttcaagcattcccaagtatctacacatgtggggaagg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 catattttggggtaacaacatttttcaagcattcccaagtatctacacatgtggggaagg 618
Query: 429 agcacaaagaagctctgcagtatttgaccataaatgtgacagaatttgcagacacaaaat 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agcacaaagaagctctgcagtatttgaccataaatgtgacagaatttgcagacacaaaat 678
Query: 489 caggttacaggaataattttattttgatgaaa----------cttggaaaatatagttct 538
|||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 679 caggttacaggaataattttattttgatgaaaactgatgaaacttggaaaatatagttct 738
Query: 539 ctccaaagaatttgatctgaatgagagtggtaacccatcttcaaagtccactgaaatcaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ctccaaagaatttgatctgaatgagagtggtaacccatcttcaaagtccactgaaatcaa 798
Query: 599 atggaaacatggaaaggatttgacaaaatgctcagatctaatgcagaataagaccagcag 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atggaaacatggaaaggatttgacaaaatgctcagatctaatgcagaataagaccagcag 858
Query: 659 gagtaggcactgtg 672
||||||||||||||
Sbjct: 859 gagtaggcactgtg 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_m04.g1 MSMg01no528_m04.g1 CHROMAT_FILE:
MSMg01no528_m04.g1 PHD_FILE: MSMg01no528_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:27 2005
(510 letters)
>mm_chr14_37581427_37582336
Length = 910
Score = 897 bits (464), Expect = 0.0
Identities = 485/492 (98%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 4 gtgtagcttccacctctccagtgctgggattaga-gtcatgatccaccacacctgcttat 62
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 504 gtgtagcttccacctctctagtgctgggattagaggtcatgatccaccacacctgcttat 445
Query: 63 gcagtgctgacaatcatatgcaggacacaggacttctcacacacctcaactgctccttgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcagtgctgacaatcatatgcaggacacaggacttctcacacacctcaactgctccttgg 385
Query: 123 attttaatggcttttaattcttctttagtgccacatttattgttgtggctagaagaatat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attttaatggcttttaattcttctttagtgccacatttattgttgtggctagaagaatat 325
Query: 183 tcatgtagagcagttaaaaggggctcttacaatctttctgcctccttttctaccatgccc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcatgtagagcagttaaaaggggctcttacaatctttctgcctccttttctaccatgccc 265
Query: 243 cttgagcctcagatgtggggggttgtatggtagatgtaccaactgcggatggacattgta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttgagcctcagatgtggggggttgtatggtagatgtaccaactgcggatggacattgta 205
Query: 303 taaacagttgttctctgcattttgtttgatcatgaaatcgtatatatgcaaccgatgtta 362
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 taaccagttgttctctgcattttgtttgatcatgaaatcgtatacatgcaaccgatgtta 145
Query: 363 agcagactcagtaggttatatttacatatttatgaatttatgtgtgtatgtaagacaata 422
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 144 agcagactcagtaggttatatttacatatttatgcatttatgtgtgtatgtaagacaata 85
Query: 423 ataattaaggaaaaagaggccatgagtttgaaagggagtgaggggagggtactagagggt 482
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 84 ataattaaggaaaaagaggccatgagtttgaaagggagtgaggggagggtattaaagggt 25
Query: 483 gtggaaagatgt 494
||||||||||||
Sbjct: 24 gtggaaagatgt 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
