BAC Information

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BAC

Clone NameMSMg01-530K14
Chromosome14 (Build37)
Map Location 29,914,933 - 29,977,836
singlet/doubletdoublet
Overlap geneCacna2d3
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218, Lrtm1
Downstream genePpia-ps15, EG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530K14.T7 (MSMg01no530_k14.b1)MSMg01-530K14.TJ (MSMg01no530_k14.g1)
ACCAG599246AG599247
length761768
length of high quality
(start - end)		714 (48 - 761)650 (75 - 724)
definitionCHROMAT_FILE: MSMg01no530_k14.b1 PHD_FILE: MSMg01no530_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:03 2005CHROMAT_FILE: MSMg01no530_k14.g1 PHD_FILE: MSMg01no530_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,977,127 - 29,977,836)(29,914,933 - 29,915,582)
sequence
ACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTACCCATCCCCCTCCCCCTGCCCCCAGTCTCTCCCATTTGC
TGGCAATGCAATTCAGTAGGCAATCTGCAGGAACTCCAAACCTATTTACT
TGCGTTGGCAAATTAGACCTGTATCCCTCCTCCTCACCCCCCACTAAGTC
CAACTTGCAGAAAATGCCTTGGGTTTGATCAATTGCACATTTGTTTCAGT
TTCCCATCTAGGAATAGCACCTTGGCCATTGAGGAGTCATTTGGGTGATT
GCTTTAAGCTACAACTTCTTACTGCCTAGAAGCAATTACTCAGGGGGTGT
CAAAGCCATCATAAGAAAGTTGTTGGAGGTTGGAAATGGAATTTACAGTA
TTTTCCCAAGAAACCAGTGCATATCAAAGAAGTTGTGATCATTGGGACAG
AGAGACACACTTAAGGAGAAGCATCCTGCTGAGTCGTGGTACATAGATTG
CCATCTGCATTGCTTGGCATGGAGGAAGCTGATTATGTTGGGACCTCTAT
TTCAGAGCAGATGGGTTCATTAAATTTAATAGCCTCCAGAGCCTTTAGAA
ACCGTGGTAAAAACATGTGGAGCATGCTGTGACACTTCACTTCTGGCCCC
ACAGTCATTAGAACTCTGGCACAGGCAATAAATATTACAGTACTTTATTT
CCATCAAAACAGATTACTACTATAATTATTATATATGTGGGTTTTGGTTT
TTGGTTTTTGG

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAATAAAAATTATAGGAAGTCTGAT
GGCTTGCGGGGAAATATATGAAGCTTGGGGAGAAAGAACAATCCTTGGGA
AAATCCCAAGAGCTAAGAGCTGACACATCCTTATAAAGTGCTAACCAGGA
GGGCCAGTCCATCCTGGATCCTGCTCCCTGGAGTTCTTGCTTCCCTCCTG
TCTGTAGCTCTACCTGGCGAGCATGCACACCTTTCCCAGAATTCTTTATG
AGGAGGGACAGATGCCTTAGGTCCGTGTGTACCACCCCTCTGTCTCTAGG
ATCCCCCACCAGGGTCAGGGAAAACACAGAACTCATTCCCAGAGATGCTG
GTTCCTCCCCTGCACCGCTCCTCCCTGGTCCCTCATCACATCACAGTGTT
CTGCTGATTTCTTCCTCTGTGAGTGATGTTGAAAAGGCAGCCATGTATGT
AGAGGGCTTTGGATGACACTAGCCACATGGTAAGAACAATAAACATACTG
GGTTTTTTTTTTCATTATTACTATGGTTTTATTTTAACTTCATTTTAACA
ATCACAATAATTGCTTTCATCATTCCTAGAGATATTGGGGTGCTAGAGGC
TAAAACCGTGGCTTTCTTGCTTACAAGCTACAAAACATGGAGAATGTTTA
AACTTTCTGTGCCCCAGTTTTTTGTTTTGTTGGTTTTTTGTTTTGTTGGG
TGGTCTGTTTTGTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_k14.b1 MSMg01no530_k14.b1 CHROMAT_FILE:
MSMg01no530_k14.b1 PHD_FILE: MSMg01no530_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:03 2005
         (714 letters)



>mm_chr14_29976923_29978036
          Length = 1114

 Score = 1350 bits (698), Expect = 0.0
 Identities = 707/710 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattacccatccccctccccctgcccccagtctctcccatttgctggcaatgcaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 gaattcattacccagccccctccccctgcccccagtctctcccatttgctggcaatgcaa 855

                                                                       
Query: 65  ttcagtaggcaatctgcaggaactccaaacctatttacttgcgttggcaaattagacctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ttcagtaggcaatctgcaggaactccaaacctatttacttgcgttggcaaattagacctg 795

                                                                       
Query: 125 tatccctcctcctcaccccccactaagtccaacttgcagaaaatgccttgggtttgatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tatccctcctcctcaccccccactaagtccaacttgcagaaaatgccttgggtttgatca 735

                                                                       
Query: 185 attgcacatttgtttcagtttcccatctaggaatagcaccttggccattgaggagtcatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 attgcacatttgtttcagtttcccatctaggaatagcaccttggccattgaggagtcatt 675

                                                                       
Query: 245 tgggtgattgctttaagctacaacttcttactgcctagaagcaattactcagggggtgtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgggtgattgctttaagctacaacttcttactgcctagaagcaattactcagggggtgtc 615

                                                                       
Query: 305 aaagccatcataagaaagttgttggaggttggaaatggaatttacagtattttcccaaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aaagccatcataagaaagttgttggaggttggaaatggaatttacagtattttcccaaga 555

                                                                       
Query: 365 aaccagtgcatatcaaagaagttgtgatcattgggacagagagacacacttaaggagaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 554 aaccagtgcatatcaaagaagttgtgatcattgggacagagagacacacgtaaggagaag 495

                                                                       
Query: 425 catcctgctgagtcgtggtacatagattgccatctgcattgcttggcatggaggaagctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 catcctgctgagtcgtggtacatagattgccatctgcattgcttggcatggaggaagctg 435

                                                                       
Query: 485 attatgttgggacctctatttcagagcagatgggttcattaaatttaatagcctccagag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 attatgttgggacctctatttcagagcagatgggttcattaaatttaatagcctccagag 375

                                                                       
Query: 545 cctttagaaaccgtggtaaaaacatgtggagcatgctgtgacacttcacttctggcccca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cctttagaaaccgtggtaaaaacatgtggagcatgctgtgacacttcacttctggcccca 315

                                                                       
Query: 605 cagtcattagaactctggcacaggcaataaatattacagtactttatttccatcaaaaca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cagtcattagaactctggcacaggcaataaatattacagtactttatttccatcaaaaca 255

                                                             
Query: 665 gattactactataattattatatatgtgggttttggtttttggtttttgg 714
           ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 254 gattactactataattattatatatgtgggttttgttttttggtttttgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no530_k14.g1 MSMg01no530_k14.g1 CHROMAT_FILE:
MSMg01no530_k14.g1 PHD_FILE: MSMg01no530_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:04 2005
         (650 letters)



>mm_chr14_29914733_29915782
          Length = 1050

 Score = 1241 bits (642), Expect = 0.0
 Identities = 648/650 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaataaaaattataggaagtctgatggcttgcggggaaatatatgaagcttggggagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaataaaaattataggaagtctgatggcttgcggggaaatatatgaagcttggggagaa 260

                                                                       
Query: 61  agaacaatccttgggaaaatcccaagagctaagagctgacacatccttataaagtgctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacaatccttgggaaaatcccaagagctaagagctgacacatccttataaagtgctaa 320

                                                                       
Query: 121 ccaggagggccagtccatcctggatcctgctccctggagttcttgcttccctcctgtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaggagggccagtccatcctggatcctgctccctggagttcttgcttccctcctgtctg 380

                                                                       
Query: 181 tagctctacctggcgagcatgcacacctttcccagaattctttatgaggagggacagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagctctacctggcgagcatgcacacctttcccagaattctttatgaggagggacagatg 440

                                                                       
Query: 241 ccttaggtccgtgtgtaccacccctctgtctctaggatcccccaccagggtcagggaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ccttaggtccgtgtgtaccacccctctgtctctaggatcccccaccaggctcagggaaaa 500

                                                                       
Query: 301 cacagaactcattcccagagatgctggttcctcccctgcaccgctcctccctggtccctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagaactcattcccagagatgctggttcctcccctgcaccgctcctccctggtccctc 560

                                                                       
Query: 361 atcacatcacagtgttctgctgatttcttcctctgtgagtgatgttgaaaaggcagccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcacatcacagtgttctgctgatttcttcctctgtgagtgatgttgaaaaggcagccat 620

                                                                       
Query: 421 gtatgtagagggctttggatgacactagccacatggtaagaacaataaacatactgggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtatgtagagggctttggatgacactagccacatggtaagaacaataaacatactgggtt 680

                                                                       
Query: 481 ttttttttcattattactatggttttattttaacttcattttaacaatcacaataattgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttttttcattattactatggttttattttaacttcattttaacaatcacaataattgc 740

                                                                       
Query: 541 tttcatcattcctagagatattggggtgctagaggctaaaaccgtggctttcttgcttac 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 741 tttcatcattcctagagatattggggtgctagaggctaaaaccgtggctttcttgcttgc 800

                                                             
Query: 601 aagctacaaaacatggagaatgtttaaactttctgtgccccagttttttg 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagctacaaaacatggagaatgtttaaactttctgtgccccagttttttg 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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