BAC Information

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BAC

Clone NameMSMg01-531A07
Chromosome14 (Build37)
Map Location 14,514,529 - 14,515,181
singlet/doubletsinglet
Overlap geneA430083B19Rik
Upstream geneCadps, EG432822, LOC100042022, LOC100042026, EG328354, Synpr
Downstream geneEG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531A07.T7 (MSMg01no531_a07.b1)MSMg01-531A07.TJ (MSMg01no531_a07.g1)
ACCAG599520AG599521
length731741
length of high quality
(start - end)
563 (52 - 614)655 (84 - 738)
definitionCHROMAT_FILE: MSMg01no531_a07.b1 PHD_FILE: MSMg01no531_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:32 2005CHROMAT_FILE: MSMg01no531_a07.g1 PHD_FILE: MSMg01no531_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTGTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTTTTCTCTGAGCCCCATATTTAATGGGGTTATTT
GAATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTAGATATTGGATATTAG
TCCCCTATCAGATGTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTG
GCCTTTTTGTCTTATTGAGGGTGTCTTTTGCCTTACAGAAGCTTTGCAAG
TTTATGAGGTCCCATTTTTCAATTCTTGATCTTACAATCGCAAGCCCTTG
CTGTTCTGTTTAGGAAAATTTCCCCTGTACCCATATCTTCAAGGCTTTTC
CCTACTTCCTCCTGTATTAATTTCAGTGTCTCTGGTCTTATGTGGAATTC
TTTGATCCACTTAGACTTGACCTTAGTACAAGGAGATAGGAATGGATTAA
TGCGCATTCTTTTTTTTTTTTTCGTTTTTTATTTTTATTTTTTTTCCATT
TTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTC
CCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTG
GCCCTGGTGTTCCCCTGCACTGGGGCATATAAAGTTTGCAAGTCCAATGG
GCTTCTCTTTCCAGTGATGGCCGACTATGCCATCTTTTGATTTATCTGCA
TTTAGTTTCCAGATTTCCCGGGTTCTGTTTT
CCTTTCGCCTATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGAAGTTCACCACA
GCTCAGGTATAATGGAAGTACCAGGAAGATCAGTGTAAGAATTTTCAGAG
ACAAGCCATGGAAGGATTTCCCCAGTGATGGCACTAGCTATGCTAGATTG
TTAGTAACATATATAGTTTTCTTTACCACCTCTAAATATGAAGTTTATAT
ACAAGAGAGGTCCACTTATTCTTTATTTTCAGAGAGAAGAAACCAAGCCA
AAATACCAAGACATCCTTTCTGAGCTTGATGAGCACACAGAAAATAAGCT
GGACTTTGAGGACTTCGTGATCTTGCTCCTGAGCCTCGCCATCATGTCAG
ATCTGCTACGAAATATGTGGAATGAAAATACTATGAAATAAACAAATTTA
AACATGTGATGGACAAATGATGTGCCACAGCATTAAATGTGTCTCTATCT
GGTTTGTAATAAGTGTGGGACTGCAACTCTCTTCAGAAATGTTTGAATGA
TATGGTTTGTGACACGATAAACTGGATACCACTTCTGATGAGTAATGAGC
AACTTAAAGGCATCTCCTACTGAGTGTGGAATCACATTTATTCATTGATC
ATGAAATCAAATTTGTGAGCATCTTCCCAGTAACGTTATTTTAAAACTGC
AGTGACGAATGGCCAGGTGACTCCTTCCCTTTCTCAAGNTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_a07.g1 MSMg01no531_a07.g1 CHROMAT_FILE:
MSMg01no531_a07.g1 PHD_FILE: MSMg01no531_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:32 2005
         (655 letters)



>mm_chr14_14514329_14515383
          Length = 1055

 Score = 1247 bits (645), Expect = 0.0
 Identities = 651/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggaagttcaccacagctcaggtataatggaagtaccaggaagatcagtgtaagaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggaagttcaccacagctcaggtataatggaagtaccaggaagatcagtgtaagaatt 260

                                                                       
Query: 61  ttcagagacaagccatggaaggatttccccagtgatggcactagctatgctagattgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagagacaagccatggaaggatttccccagtgatggcactagctatgctagattgtta 320

                                                                       
Query: 121 gtaacatatatagttttctttaccacctctaaatatgaagtttatatacaagagaggtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gtaacatatatagttttctttaccacctctaaatatgaagtttatatacaagagaggccc 380

                                                                       
Query: 181 acttattctttattttcagagagaagaaaccaagccaaaataccaagacatcctttctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttattctttattttcagagagaagaaaccaagccaaaataccaagacatcctttctga 440

                                                                       
Query: 241 gcttgatgagcacacagaaaataagctggactttgaggacttcgtgatcttgctcctgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttgatgagcacacagaaaataagctggactttgaggacttcgtgatcttgctcctgag 500

                                                                       
Query: 301 cctcgccatcatgtcagatctgctacgaaatatgtggaatgaaaatactatgaaataaac 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttgccatcatgtcagatctgctacgaaatatgtggaatgaaaatactatgaaataaac 560

                                                                       
Query: 361 aaatttaaacatgtgatggacaaatgatgtgccacagcattaaatgtgtctctatctggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatttaaacatgtgatggacaaatgatgtgccacagcattaaatgtgtctctatctggt 620

                                                                       
Query: 421 ttgtaataagtgtgggactgcaactctcttcagaaatgtttgaatgatatggtttgtgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtaataagtgtgggactgcaactctcttcagaaatgtttgaatgatatggtttgtgac 680

                                                                       
Query: 481 acgataaactggataccacttctgatgagtaatgagcaacttaaaggcatctcctactga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acgataaactggataccacttctgatgagtaatgagcaacttaaaggcatctcctactga 740

                                                                       
Query: 541 gtgtggaatcacatttattcattgatcatgaaatcaaatttgtgagcatcttcccagtaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgtggaatcacatttattcattgatcatgaaatcaaatttgtgagcatcttcccagtaa 800

                                                                
Query: 601 cgttattttaaaactgcagtgacgaatggccaggtgactccttccctttctca 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cgttattttaaaactgcagtgacgaatggccaggtgactccttccctttctca 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)