BAC Information

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BAC

Clone NameMSMg01-531A20
Chromosome14 (Build37)
Map Location 99,727,724 - 99,728,202
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5
Downstream geneLOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531A20.T7 (MSMg01no531_a20.b1)MSMg01-531A20.TJ (MSMg01no531_a20.g1)
ACCAG599546AG599547
length771782
length of high quality
(start - end)		586 (47 - 632)592 (74 - 665)
definitionCHROMAT_FILE: MSMg01no531_a20.b1 PHD_FILE: MSMg01no531_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:34 2005CHROMAT_FILE: MSMg01no531_a20.g1 PHD_FILE: MSMg01no531_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTTATTTGXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCATTTTCTATTTGATGGGTAGGTAGCAACAGATGATGCTCTGGG
ACCCTTTCTCATTGCTGAGCTCTGTTCTTGGTCTTAATGTGAATTATCTC
TTTAAAATGTCCCAACAATCCTGAAAGAAAAATACTGCTGTTCAGTGTGT
TTGCTGTTTGGTAAGGTACTCCTTCCTTCCATCACTGTTCAACACTCAGG
AGGCAAAGGCAGGGGGGATCTGTGTAAGTTTGAGGCCAGCCTGGTCTATA
GAGAGCATTCCTGAACAGTTGGCAGAGAAACCCTGTCTCAAAACAAAACA
AAACAAATTCTTCAATGAGTTATTAAATAACTATTCCAATGGAAGGTGAA
AACACAGTCTGAAAATAATTGAACCAAGTTATTCCCAGCGGCTTGGAACA
ACTTAGTGTCAATAATTCTTGCCCCTGTCACTTCTTGGCTTTTTAGATTA
CACCAATTCTTCTTAACTAGTGGATTTAGTCACTAGCCCGCATGGACAGG
TCCTAGAGAGAAGGGACAGAACCGGAAATGTGCAGGACAGAAAGGACATC
GAGTTCATTGTTATACAAGCAAGACTTTGTGAAAATAGTCCAGTGGGCAG
TGAAGGCTCCTGAGACAGACATCATTCATTCTGTAGCCCCATGCGACCTT
ATACTCTCTGTGCAAGCAAGGGTGGACTTCAATTTGTAATCCTCCTGCCT
CCGCCACACAAGTGCTGAGAA

CCTTTTATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAACTCTGTACGCCATTTTTT
TAAACTTGGTTATTTTTGTTTTTGGAGGTTAGCTTCTTGAGTTCTTAATA
TATTTGGATATTAGCCCTCTATCAGATGTGGAGTTGATGAAGATTTTTTT
TTCCCAATCTGTTGGTTGCCAATTTGTCCCATTGACTGTGTCTTTTGCCT
TACAGAAGCTTTTCAGTTTCATAGGGCCCCATTTACTGATTCTTGATCTT
AGAAGCTGAACCATTAGAGCTCTGTTTAGGAAATTTCCCCCAGTGCCAAT
GCGTTTGAGGCTCTTTCCAGCTTTCTCTTCTATTTGATTCAATGTATCTG
GTTTTATGTTGAGTCCTTGATCCACTTAGACTTGAGCCTTGTGCAAGGTG
ATTAAAATATAGATCTATTTTTATTTTTCTACATGCAGACCAACAAGTTA
GACCAGCAAAATTTATTGAAAGTGCCTTCTTTCTTCCATTGTATGTTTTT
GGCTGCTGTATCAAAATTCAAGTGTCCTTAAGTGAGTGGTTTTATTTCTG
GGTCTTCAATTCCATTCCATTGATCAACGTATCTGTCTCTGTACCAATAC
CATGTGGTCTCTGTAGTAAAGCTTGAGGTCAGGTATGGTAATTCAACCAG
AAGTTCTTTTTATGTTGAGGATTGTTTTGGCTATCTTTGGGTTTTTTGTT
TTTCCTGTGGAAATTGAGATATGGTTTTTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_a20.b1 MSMg01no531_a20.b1 CHROMAT_FILE:
MSMg01no531_a20.b1 PHD_FILE: MSMg01no531_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:34 2005
         (586 letters)



>mm_chr14_99727217_99728202
          Length = 986

 Score =  926 bits (479), Expect = 0.0
 Identities = 479/479 (100%)
 Strand = Plus / Minus

                                                                       
Query: 108 aaaatgtcccaacaatcctgaaagaaaaatactgctgttcagtgtgtttgctgtttggta 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 aaaatgtcccaacaatcctgaaagaaaaatactgctgttcagtgtgtttgctgtttggta 927

                                                                       
Query: 168 aggtactccttccttccatcactgttcaacactcaggaggcaaaggcaggggggatctgt 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 aggtactccttccttccatcactgttcaacactcaggaggcaaaggcaggggggatctgt 867

                                                                       
Query: 228 gtaagtttgaggccagcctggtctatagagagcattcctgaacagttggcagagaaaccc 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gtaagtttgaggccagcctggtctatagagagcattcctgaacagttggcagagaaaccc 807

                                                                       
Query: 288 tgtctcaaaacaaaacaaaacaaattcttcaatgagttattaaataactattccaatgga 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tgtctcaaaacaaaacaaaacaaattcttcaatgagttattaaataactattccaatgga 747

                                                                       
Query: 348 aggtgaaaacacagtctgaaaataattgaaccaagttattcccagcggcttggaacaact 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aggtgaaaacacagtctgaaaataattgaaccaagttattcccagcggcttggaacaact 687

                                                                       
Query: 408 tagtgtcaataattcttgcccctgtcacttcttggctttttagattacaccaattcttct 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tagtgtcaataattcttgcccctgtcacttcttggctttttagattacaccaattcttct 627

                                                                       
Query: 468 taactagtggatttagtcactagcccgcatggacaggtcctagagagaagggacagaacc 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 taactagtggatttagtcactagcccgcatggacaggtcctagagagaagggacagaacc 567

                                                                      
Query: 528 ggaaatgtgcaggacagaaaggacatcgagttcattgttatacaagcaagactttgtga 586
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggaaatgtgcaggacagaaaggacatcgagttcattgttatacaagcaagactttgtga 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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