BAC Information

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BAC

Clone NameMSMg01-531M22
Chromosome14 (Build37)
Map Location 36,107,784 - 36,108,263
singlet/doubletsinglet
Overlap geneGrid1
Upstream gene3110001K24Rik, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531M22.T7 (MSMg01no531_m22.b1)MSMg01-531M22.TJ (MSMg01no531_m22.g1)
ACCAG600118AG600119
length779756
length of high quality
(start - end)
348 (49 - 396)580 (82 - 661)
definitionCHROMAT_FILE: MSMg01no531_m22.b1 PHD_FILE: MSMg01no531_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:33 2005CHROMAT_FILE: MSMg01no531_m22.g1 PHD_FILE: MSMg01no531_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCAGATCTACTTTGCTAAAGCCACCGGGGTTATGGGAGAGAG
GGATGAGGGAAGAGGTTCCCAACACCTGTGAGAGTGAGTGCAGTGGATCT
TGACTGGAGCACAGGAAGGCCTTCTAACGGGAGATTAGGAGAGAGCCTGT
CCCATCCTCCAAGCACAGTGGGCCTTGATGAGCAGAGACATTCAATGGCT
TTAGAGCTTTATTATAAAAAGGCATGGAGAAAAAGAGAGAAGGTAGAAGA
GAGAGGAGGGAGAGAGAGAGAGAAAGTTAGAGAGAAAGAAAGAGGGAGAG
AGGAGAGGAGAAGACAGAGAGGAGAGAGGGGGTGAGAGTGAGGGGTNATA
TNTNNNGTNNTTNNATNTNTNNNNTNNNTTTTTNNNNNNTTTTTTTGGTT
TTTTTGGTNGNGGGGGGTTTGGTTGTGGTTTTTGGTTTGGGGTTGGGTTT
TGTTTTTTTGTTTTTGGTGTGGTTTGTTTTTTGTTTTTTGTGTGTGTTGT
GTTGGGTGTTTGTTTGTGTGGGTGTGTTTTTTTGTTTTTTTGTTGGGTTT
TTTGGTTGTTGTGGTGTGCGTTTTGGTTTTCTTGGTGTTTTGTGTTTTTT
TTTGTTGTTTGTGTTTGTTGGGTTTTTTGTTGTTTGGGTTTGTTGTTCTT
GGGTTTGTTTTTTGTTTTTGGGTTTGTGTTTTGGTTTTTTTTGGTTTTTG
TGGGGTTTGTGTTTGGGTTTTTGCCTTTT
CCTTTCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGGCTCCTGCCATGCAC
ACACAAAACCAGAAGGAGACTACAGGTACACGTTCATCAGACCAATTTCT
CAAGGACAAAGTGTGAATCTAATACTCATACTCATATTTATACTTATACT
TATACCCTGCTGGCTTCCTAGCACTGAGTACCAGGCCAGAGAGGTACCCA
TGAAGTAAGCAAAGACGATTCGGGAGAGAGAGGCAAGAAATGATGGAAAG
AAACTGAGAAAATCAGGGGGGATCCTTCATCCCTATGAACACACCTGGAC
AGAGTGACCTCAATTTTTTTTTAATATTTAAAATCATGACCCCAGGAACT
ATCTCTATGTCACCAAGACAACGCTTTTCATTTTGTCATTAGCTTTTTGG
ATTTTTAAAAGCTGGTTGGGTCCTTTAATTTGCAGCATACTCCCCAGGCA
GATATTCAAACAGAAAAATAAATATCATAGCAGCTGATCCCTCTCTGTAC
TCATTTGCTTGCTTGTTACAAACCATTTTAATTATTTTATTTGCAATACC
TATTTGTTTGTCTCAGGGGAACATTTAAATCTCCTTGTATTTGTGCATAA
CTCTCCTAACCACTAGGAAAATGAGACCTTCTGTTTCACATTAACACTTC
ATGGGTTTTTTTTATCCCTCGAGAGCTGATAGAAAATATACATTTGAGTC
ACACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_m22.g1 MSMg01no531_m22.g1 CHROMAT_FILE:
MSMg01no531_m22.g1 PHD_FILE: MSMg01no531_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:33 2005
         (580 letters)



>mm_chr14_36107784_36108763
          Length = 980

 Score =  913 bits (472), Expect = 0.0
 Identities = 478/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggctcctgccatgcacacacaaaaccagaaggagactacaggtacacgttcatcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaaggctcctgccatgcacacacaaaaccagaaggagactacaggtacacgttcatcaga 421

                                                                       
Query: 61  ccaatttctcaaggacaaagtgtgaatctaatactcatactcatatttatacttatactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ccaatttctcaaggacaaagtgtgaatctaatactcatactcatatttatacttatactt 361

                                                                       
Query: 121 ataccctgctggcttcctagcactgagtaccaggccagagaggtacccatgaagtaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ataccctgctggcttcctagcactgagtaccaggccagagaggtacccatgaagtaagca 301

                                                                       
Query: 181 aagacgattcgggagagagaggcaagaaatgatggaaagaaactgagaaaatcagggggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aagacgattcgggagagagaggcaagaaatgatggaaagaaactgagaaaatcagggggg 241

                                                                       
Query: 241 atccttcatccctatgaacacacctggacagagtgacctcaatttttttttaatatttaa 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 240 atccttcatccctatgaacacacctggacaaagtgacctcaatttttttttaatatttaa 181

                                                                       
Query: 301 aatcatgaccccaggaactatctctatgtcaccaagacaacgcttttcattttgtcatta 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 180 aatcatgaccccaggaactatctctatgtcaccaagacaatgcttttcattttgtcatta 121

                                                                       
Query: 361 gctttttggatttttaaaagctggttgggtcctttaatttgcagcatactccccaggcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gctttttggatttttaaaagctggttgggtcctttaatttgcagcatactccccaggcag 61

                                                                       
Query: 421 atattcaaacagaaaaataaatatcatagcagctgatccctctctgtactcatttgcttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  atattcaaacagaaaaataaatatcatagcagctgatccctctctgtactcatttgcttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)