BAC Information

Click to search

BAC

Clone NameMSMg01-532A15
Chromosome14 (Build37)
Map Location 113,683,428 - 113,683,670
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509
Downstream geneTpm3-rs7, LOC100043510, LOC382947, LOC668791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532A15.T7 (MSMg01no532_a15.b1)MSMg01-532A15.TJ (MSMg01no532_a15.g1)
ACCAG600294AG600295
length733793
length of high quality
(start - end)		580 (51 - 630)246 (82 - 327)
definitionCHROMAT_FILE: MSMg01no532_a15.b1 PHD_FILE: MSMg01no532_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:51 2005CHROMAT_FILE: MSMg01no532_a15.g1 PHD_FILE: MSMg01no532_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAG
GATCCGCGGAATTCAGTGAGCATGACTATACTGGCTAGTTTTGTGTCAAA
TTAACACAGCTCGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGAAAATG
CCTCCATGAGATACAACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGG
GAAAGGCCCCTTGTGGGTGATGCCATCTCTGGGCTGGTAGTCTTGGGTTC
TATAAGAGAGCAGGCTGAGCAAGCCAGTAAAAAACATTCCTCCATGGACT
CTGCATCAGCTCCTGCTTCCTGACCTGTCTGAGTTCCAGTCCTGACATCC
TTGGTGATAAACAGCAGTATGGAATTGTAAGCTGAATAAACCCTTTCCTC
CCCAACTTGCTTCTTGGTCATGATGTTTGTGCAAGAATAGAAACCCTGAC
TAAGACAATGAGAAACAACAGCATTGCTATAAACCTTTTTGTATATCCAG
TGTGATGGTTTGTATATTCTTGGACCAGGGAGTGCCACCATTTGGAGGTG
TGGCCTTGTTGGAAATGGTTTGACCTGGTTGGAGTAGGTGTGCAACTGTG
GGACTCTCACCCCAGTTGCCTGGAAGTCAGTCTTCCAGTAGCAGCCTTTG
GATGAAGATGTAGAACTCTCAGCTCTGCTTGTGCCATGCCTACCTGGATG
CTGCCATGCTCCACCTTGATGATAATGGACTGN

NNCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTGGAATTTAAAACAAC
AAAAGAAATGCCATCTTCTTGTGTATTTTCTGGGAAATATTCTGTATGTG
TTTCCTCCCATCTAAGTAAAATTAGCAAGCACTTGGGTAGTAGAATTTCA
CCCTAGATTTATTTTTGCAAGTGAACACATTTTTTTCTTTCTTTGACATA
TATATGTATTGTACATATATATATATATGTGTGTGTGTGTGTGTGTGAGT
GTGTGTTTGTGTGTGTGTGTGTGTCTGTGTTTTTTTGTGTGTGTGTTTTN
TTTGTTTGTGTGTGTTGTTTTTTTGGTTTGTTGTGTTTGGTTGTTGTNGT
TTTGGTGTGTTTTTGTTTTGTTTTTTTGTGGGGTGTGTTTTTTTTGGTTT
GTTTTTTTTTGTGTTGTGTTTTTGTGTTTTTGTTGGTTGTGTTTTTGGGN
TTTTTTGGTGTTTTTTNGTTTTNTTTTTGTTTNTTTTTTTTTTGTTTGTT
GTGTGGTGTGTTGTTGTTTGGTTTTTGTTTTGTTTGTTTGTTTGGTTTTG
TGTGTTTGGTTTGTGTGTNTTTTTTTGTTTTTTTTGTTTGTTGTTGTTGT
TTTGTTTTTTGGTGTTTTTTTGGTTGGGTTTTGTGTTTTGTGTGGTGGTT
TTTGTTTGTGGTTTTGTTGTGTGGGTGTTTTTTTTGGTTGTTTTTTTTTG
GGTGTGTTGTTTTTTTTGTTTGTTGTGTGTTTTTTTTTNGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_a15.g1 MSMg01no532_a15.g1 CHROMAT_FILE:
MSMg01no532_a15.g1 PHD_FILE: MSMg01no532_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:51 2005
         (246 letters)



>mm_chr14_113683275_113683920
          Length = 646

 Score =  416 bits (215), Expect = e-121
 Identities = 236/243 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactggaatttaaaacaacaaaagaaatgccatcttcttgtgtattttctgggaaatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 396 aactggaatttaaaacaacaaaagaaatgccatcttcttgtgtattttctgagaaatatt 337

                                                                       
Query: 61  ctgtatgtgtttcctcccatctaagtaaaattagcaagcacttgggtagtagaatttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 336 ctgtatgtgtttcctcccatctaagtaaaattagcaagcacttgggtagtaaaatttcac 277

                                                                       
Query: 121 cctagatttatttttgcaagtgaacacatttttttctttctttgacatatatatgtattg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 276 cctagatttatttttgcaagtgaacacattttcttctttctttgacatatatatgtattg 217

                                                                       
Query: 181 tacatatatatatatatgtgtgtgtgtgtgtgtgtgagtgtgtgtttgtgtgtgtgtgtg 240
           ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |||
Sbjct: 216 tacatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtg 157

              
Query: 241 tgt 243
           |||
Sbjct: 156 tgt 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |