BAC Information

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BAC

Clone NameMSMg01-532H07
Chromosome14 (Build37)
Map Location 40,335,516 - 40,335,858
singlet/doubletsinglet
Overlap genenone
Upstream geneNrg3
Downstream geneLOC100040439, LOC218945, LOC100040470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532H07.T7 (MSMg01no532_h07.b1)MSMg01-532H07.TJ (MSMg01no532_h07.g1)
ACCAG600610AG600611
length764761
length of high quality
(start - end)		671 (50 - 720)608 (81 - 688)
definitionCHROMAT_FILE: MSMg01no532_h07.b1 PHD_FILE: MSMg01no532_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:23 2005CHROMAT_FILE: MSMg01no532_h07.g1 PHD_FILE: MSMg01no532_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAGATTCTTCTCTGTTCAAAACACTGAGAATAAGTATTAG
TTAAGATATTTAATTCCAAACAGGATATTTGCATCATTTTCCTCCAAGCC
TCAGTGAACATCACAGAATAAGAGAGCAAAAAAAAAAAAAAAAAAAATGA
AGAGCCAAACCATGTAACAGTATCTCATAGGAATGGAACTGTCATTGGAA
TCATGATCTAAAACAAATATATCTGTCTGCACTGGGCCTGCACACTACTA
AACCTCTCACAAGGCAATCCTGAATCAGGGAGAGTATCACTGGGTCCTAG
GCTTCTCTGCTGAAGTATCTGTTATTGATGGATTTGGAGTAAGGGGGAAT
TCTTGTCCTCATTGTTGAACATGCTAATGAACCCACTGAGATTCAATGGA
TAGTACCAAACCCATGGTGACATTGCTCTTGGTTAATCACAGTTGGTCAA
AACAAAACAAAATAAATAAAACAAAACAAAACCAGACATGAAATTATGGA
ATAACTTGTTGGAAGCAGGAGATGACACAACGGGAGGAGATAAGAGGTCG
TTGACGTAGGGATAATGGAGGTAAACAGAGTACATTGTATACATGCATAG
AATTCTGAAAGGTCAAAATTATTAAAAATTTCAAAAGGAAGTATTGCACA
AGCCAGTGACATACTTGCTTATTGTCATTAGCATATATGTATGTACCATA
CTTCCTTAAATATG

TTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTAATCTGCATTGGTTT
TCATTTTGACCCATAGACAGTATCCTTTGCCTTAGAGGAGCTTTTTTAGT
TTCATTCCCATTTTTTTTTCTGGCATTTTTTTTAATTGGGTATTTTCTTC
ATTTACATTTCCAGTGCTATCACAAAAGTCCCCCATATACTCCCCCACCC
ATTCCCCTACCTGCCCACTCCCACTGAAAATCTCATGGTACAGATAAAGA
AAGAAGAATCTCAGGAACTTGATGGCTGGGAAGTCTAATCAAGGAGTGAG
CTCCAGTTTCAATGAGATGCCCTGTCTCAAAGCACAGGGGCCAAACATGG
CTCAACAGTAAAGGCACTTGCTTCCAAACCCAAATTACTTTGATTTAATT
CTCAGTGCCTACATGGTAAAGAGAGAGAAGCAACTCCTACAAGTGGTCTT
GTGGCATTCACACATGTACTATGACATTTGCATGTATATATGCATATGCC
CAATAAATAAATAAATGTAATAAAATTGAATATACATGCAAATCAAACAT
TTAAAAGTGAGTTGCAAATTATAAAGAAATAGTCAATATTAAACTCTTTC
CTCTTCAAATATGCATAGGTACATACATGTGCAAACATATATACATCACA
CACACAAATAATTTTAATTGTACTCTAATTTCAACATTATTTACATTTTT
CATATTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_h07.g1 MSMg01no532_h07.g1 CHROMAT_FILE:
MSMg01no532_h07.g1 PHD_FILE: MSMg01no532_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:23 2005
         (608 letters)



>mm_chr14_40334850_40335858
          Length = 1009

 Score =  640 bits (331), Expect = 0.0
 Identities = 340/343 (99%), Gaps = 1/343 (0%)
 Strand = Plus / Minus

                                                                        
Query: 267  tgagctccagtttcaatgagatgccctgtctcaaagcacaggggccaaacatggctcaac 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 tgagctccagtttcaatgagatgccctgtctcaaagcacaggggccaaacatggctcaac 950

                                                                        
Query: 327  agtaaaggcacttgcttccaaacccaaattactttgatttaattctcagtgcctacatgg 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  agtaaaggcacttgcttccaaacccaaattactttgatttaattctcagtgcctacatgg 890

                                                                        
Query: 387  taaagagagagaagcaactcctacaagtggtcttgtggcattcacacatgtactatgaca 446
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 889  taaagagagagaagcaactcctacaagtggtcctgtggcattcacacatgtactatgaca 830

                                                                        
Query: 447  tttgcatgtatatatgcatatgcccaataaataaataaatgtaat-aaaattgaatatac 505
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 829  tttgcatgtatatatgcatatgcccaataaataaataaatgtaataaaaattgaatatac 770

                                                                        
Query: 506  atgcaaatcaaacatttaaaagtgagttgcaaattataaagaaatagtcaatattaaact 565
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 769  atgcaaatcaaacatttaaaagtgagttgcaaattatagagaaatagtcaatattaaact 710

                                                       
Query: 566  ctttcctcttcaaatatgcataggtacatacatgtgcaaacat 608
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  ctttcctcttcaaatatgcataggtacatacatgtgcaaacat 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1009
Length adjustment: 10
Effective length of query: 598
Effective length of database: 999
Effective search space:   597402
Effective search space used:   597402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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