BAC Information

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BAC

Clone NameMSMg01-534A18
Chromosome14 (Build37)
Map Location 63,576,093 - 63,576,631
singlet/doubletsinglet
Overlap genenone
Upstream geneDleu7, Rnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2
Downstream geneLOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534A18.T7 (MSMg01no534_a18.b1)MSMg01-534A18.TJ (MSMg01no534_a18.g1)
ACCAG601825AG601826
length771764
length of high quality
(start - end)
572 (39 - 610)536 (67 - 602)
definitionCHROMAT_FILE: MSMg01no534_a18.b1 PHD_FILE: MSMg01no534_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:24 2005CHROMAT_FILE: MSMg01no534_a18.g1 PHD_FILE: MSMg01no534_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TATGTACACCAAACTAACCTTCAACTCACAGAGATCTACCTACTCCTGCC
TCCCTCACAGTGATCCCCTTTAATGCTGACACCTGGGAGGCAGAGGCAGA
GGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGG
CAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCA
GAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGA
GAGGGAGCCCTGTGAATTTGGAGTTAGCCTAGTCAACATAGCAAGTTCCA
GGAAGACCACTGCTACATACTGAAATCCTGTTTCAAAATAATAAAGAACA
AACAAATAGGTTATTCCATGGGTTGGTGGCAGCACTTATGGCTTTAGGCA
TCTGACTAGTTCTGTCCAGTTCTATCTCACAGGAATGGAGTCCATAAGGT
GACTACTATAAGAGGAAACCCAGCATGCAGTAGACTGAGGCAGGAGCAGC
TCAGACTTGAGGCCAGCATGATCCCAATAATACAAACAGCTGCTTGTGGT
GGTACACACTTGTAATTTCAGCATTGAGGAGTCTGAGACAGAAATTCAGA
GCCAGACTTGGTTACATCATGAGTTTCAAGCTGGCCTGGTCTATTAGGAG
ACACCCCCACCCCCTGGCTCTATTAAAGAAGAGGAAGGAAAAGGAGAGGG
AGGAAGAGACTCTCCTTAGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGCTTTCTTCACCATTCATAATTTAGTTTCTCTC
TAAAAACCAGGTATTTAAGCATCTTTATGTTCATGTATACTCTGCTATGA
AGCCAGCGTGTGATCTAAACAGAGGTACTAAGAAAGCAACAGAATCCTCC
AAAGGGAATCAGTTCAGCTTGAGAAGGTACAGTAAGGACTCCCTCGGGCT
ATCAAGATAGGGTTAACAGTAGTGGCAAGCCTGTGTCGGGAAATTGGCCA
GCCTCTCCAAGCCCTTCACCATAGTCACCTGTCAGGAATGTCACGTCATT
GCCAGGTGAGAGGCCTTCTGGGTAAACAGGCAGATTGCTCGCCCTACCCT
CTCCATGCCATCCACCACAGTACCTTGCCCACTTCTGGCCTAACAGGTGT
TGCCTGGCACAGAGGACTTGAATGAAATGCAGTCCTCCTGTTAGTTTTGT
TCTGTTCCTAGAGAAGCAGTTCCTTTCCTGGCATCGTTGCTTCTCTTCAC
AGAAGAAGTAATAATCACCATTCTTGGGCCCCAACCACACTTAGCACTGG
CGACCCAGAGTGCTTCCTAGGACAAGCCGCTTCTGCTCTCTGGCACTGGG
AAGCANGCCTGGTGTGCACCTCACACAGCCACACCCCTGGTGGCTGGCTG
CAATGTGAGAGCAGAACTCTCTCCAGGGCGTCATCACCACTGTGATTTAA
CCTGGTCCAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_a18.g1 MSMg01no534_a18.g1 CHROMAT_FILE:
MSMg01no534_a18.g1 PHD_FILE: MSMg01no534_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:24 2005
         (536 letters)



>mm_chr14_63575893_63576831
          Length = 939

 Score =  988 bits (511), Expect = 0.0
 Identities = 531/539 (98%), Gaps = 3/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctttcttcaccattcataatttagtttctctctaaaaaccaggtatttaagcatcttt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tgctttcttcaccattcataatttagtttctctttaaaaaccaggtatttaagcatcttt 260

                                                                       
Query: 61  atgttcatgtatactctgctatgaagccagcgtgtgatctaaacagaggtactaagaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttcatgtatactctgctatgaagccagcgtgtgatctaaacagaggtactaagaaag 320

                                                                       
Query: 121 caacagaatcctccaaagggaat---cagttcagcttgagaaggtacagtaaggactccc 177
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 321 caacagaatcctccaaagggaataatcagttcagcttgagaaggtacagtaaggactccc 380

                                                                       
Query: 178 tcgggctatcaagatagggttaacagtagtggcaagcctgtgtcgggaaattggccagcc 237
           |||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||
Sbjct: 381 tcgggctatcaagataggattaacagtagtggcaagcctgtgtccagaaattggccagcc 440

                                                                       
Query: 238 tctccaagcccttcaccatagtcacctgtcaggaatgtcacgtcattgccaggtgagagg 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctccaagcccttcaccatagtcacctgtcaggaatgtcacgtcattgccaggtgagagg 500

                                                                       
Query: 298 ccttctgggtaaacaggcagattgctcgccctaccctctccatgccatccaccacagtac 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttctgggtaaacaggcagattgctcgccctaccctctccatgccatccaccacagtac 560

                                                                       
Query: 358 cttgcccacttctggcctaacaggtgttgcctggcacagaggacttgaatgaaatgcagt 417
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgcccacttcttgcctaacaggtgttgcctggcacagaggacttgaatgaaatgcagt 620

                                                                       
Query: 418 cctcctgttagttttgttctgttcctagagaagcagttcctttcctggcatcgttgcttc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcctgttagttttgttctgttcctagagaagcagttcctttcctggcatcgttgcttc 680

                                                                      
Query: 478 tcttcacagaagaagtaataatcaccattcttgggccccaaccacacttagcactggcg 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttcacagaagaagtaataatcaccattcttgggccccaaccacacttagcactggcg 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 939
Length adjustment: 10
Effective length of query: 526
Effective length of database: 929
Effective search space:   488654
Effective search space used:   488654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)